miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24061 5' -60.4 NC_005262.1 + 46446 0.66 0.51032
Target:  5'- -gCGCCGcCCGCGCCGGacccgaaugcCGcGCcGGCc -3'
miRNA:   3'- uaGCGGC-GGUGCGGCCa---------GCaUGuCCG- -5'
24061 5' -60.4 NC_005262.1 + 7866 0.66 0.51032
Target:  5'- -cCGCCGCCcucgauCGCCGGacggucgaCGUACuGcGCg -3'
miRNA:   3'- uaGCGGCGGu-----GCGGCCa-------GCAUGuC-CG- -5'
24061 5' -60.4 NC_005262.1 + 21689 0.66 0.51032
Target:  5'- -gCGgCGCCGCGCUGc-UGUacGCGGGCa -3'
miRNA:   3'- uaGCgGCGGUGCGGCcaGCA--UGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 25973 0.66 0.51032
Target:  5'- uGUUGCCGCuCGCGCa-GUacacgGCGGGCa -3'
miRNA:   3'- -UAGCGGCG-GUGCGgcCAgca--UGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 55215 0.66 0.51032
Target:  5'- -cCGCCGUCGCuUC-GUCGcGCAGGCc -3'
miRNA:   3'- uaGCGGCGGUGcGGcCAGCaUGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 56156 0.66 0.51032
Target:  5'- --aGCCGUCGcCGCCGG-CGUcgACAuucGGCc -3'
miRNA:   3'- uagCGGCGGU-GCGGCCaGCA--UGU---CCG- -5'
24061 5' -60.4 NC_005262.1 + 23063 0.66 0.51032
Target:  5'- -gCGCCGCCGC-CCGuGcUCGa--GGGCg -3'
miRNA:   3'- uaGCGGCGGUGcGGC-C-AGCaugUCCG- -5'
24061 5' -60.4 NC_005262.1 + 58711 0.66 0.504326
Target:  5'- -gCGCacCGCCGaGCCGGUCGcacgcgccgccgccGCGGGCc -3'
miRNA:   3'- uaGCG--GCGGUgCGGCCAGCa-------------UGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 41638 0.66 0.500348
Target:  5'- uUCGCCuCCA-GCuCGG-CGaUGCGGGCa -3'
miRNA:   3'- uAGCGGcGGUgCG-GCCaGC-AUGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 43843 0.66 0.500348
Target:  5'- --gGCCGCgCGCGgCGGUgCGccgGCAGGa -3'
miRNA:   3'- uagCGGCG-GUGCgGCCA-GCa--UGUCCg -5'
24061 5' -60.4 NC_005262.1 + 22032 0.66 0.500348
Target:  5'- cUCGUgCGCUGCGCCGGU---GCcGGCa -3'
miRNA:   3'- uAGCG-GCGGUGCGGCCAgcaUGuCCG- -5'
24061 5' -60.4 NC_005262.1 + 46410 0.66 0.500348
Target:  5'- cAUUGUCGgC-CGCCGaGUCGaccgGCAGGUu -3'
miRNA:   3'- -UAGCGGCgGuGCGGC-CAGCa---UGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 40087 0.66 0.497373
Target:  5'- gAUCGCCGCguggucgaccgUGCGCCGGUagacccacacgcgcCGcuCGGGCg -3'
miRNA:   3'- -UAGCGGCG-----------GUGCGGCCA--------------GCauGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 6562 0.66 0.490464
Target:  5'- uGUUGCCGCCgACGagCGG-CGcgauCAGGCu -3'
miRNA:   3'- -UAGCGGCGG-UGCg-GCCaGCau--GUCCG- -5'
24061 5' -60.4 NC_005262.1 + 33876 0.66 0.490464
Target:  5'- -aCGCCGCgCGCGagaCGaUCGUGCGucGGCc -3'
miRNA:   3'- uaGCGGCG-GUGCg--GCcAGCAUGU--CCG- -5'
24061 5' -60.4 NC_005262.1 + 58625 0.66 0.490464
Target:  5'- -gCGcCCGCgACGCCGGcCGUcaccgauCAGcGCg -3'
miRNA:   3'- uaGC-GGCGgUGCGGCCaGCAu------GUC-CG- -5'
24061 5' -60.4 NC_005262.1 + 32734 0.66 0.490464
Target:  5'- gGUCGgCGagCGCGUCGG-CGUcggucagcaccaGCAGGCg -3'
miRNA:   3'- -UAGCgGCg-GUGCGGCCaGCA------------UGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 2876 0.66 0.480671
Target:  5'- aAUUGCCGUUGCGCCGcuaUCGccuucgauCAGGCu -3'
miRNA:   3'- -UAGCGGCGGUGCGGCc--AGCau------GUCCG- -5'
24061 5' -60.4 NC_005262.1 + 9965 0.66 0.480671
Target:  5'- -cCG-CGCCGCGCCGGUgGU-CAG-Cu -3'
miRNA:   3'- uaGCgGCGGUGCGGCCAgCAuGUCcG- -5'
24061 5' -60.4 NC_005262.1 + 14433 0.66 0.480671
Target:  5'- -aCGCgCGCguCGCCGaGUCGUcagcgaGCGcGGCg -3'
miRNA:   3'- uaGCG-GCGguGCGGC-CAGCA------UGU-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.