miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24061 5' -60.4 NC_005262.1 + 34167 0.66 0.461379
Target:  5'- cGUCGCCGgCACGaaGGUCGagACGcuGCa -3'
miRNA:   3'- -UAGCGGCgGUGCggCCAGCa-UGUc-CG- -5'
24061 5' -60.4 NC_005262.1 + 56156 0.66 0.51032
Target:  5'- --aGCCGUCGcCGCCGG-CGUcgACAuucGGCc -3'
miRNA:   3'- uagCGGCGGU-GCGGCCaGCA--UGU---CCG- -5'
24061 5' -60.4 NC_005262.1 + 7866 0.66 0.51032
Target:  5'- -cCGCCGCCcucgauCGCCGGacggucgaCGUACuGcGCg -3'
miRNA:   3'- uaGCGGCGGu-----GCGGCCa-------GCAUGuC-CG- -5'
24061 5' -60.4 NC_005262.1 + 43843 0.66 0.500348
Target:  5'- --gGCCGCgCGCGgCGGUgCGccgGCAGGa -3'
miRNA:   3'- uagCGGCG-GUGCgGCCA-GCa--UGUCCg -5'
24061 5' -60.4 NC_005262.1 + 6562 0.66 0.490464
Target:  5'- uGUUGCCGCCgACGagCGG-CGcgauCAGGCu -3'
miRNA:   3'- -UAGCGGCGG-UGCg-GCCaGCau--GUCCG- -5'
24061 5' -60.4 NC_005262.1 + 33876 0.66 0.490464
Target:  5'- -aCGCCGCgCGCGagaCGaUCGUGCGucGGCc -3'
miRNA:   3'- uaGCGGCG-GUGCg--GCcAGCAUGU--CCG- -5'
24061 5' -60.4 NC_005262.1 + 1470 0.66 0.461379
Target:  5'- -aCGCCGCC-CGCUcGUC-UGCcGGCg -3'
miRNA:   3'- uaGCGGCGGuGCGGcCAGcAUGuCCG- -5'
24061 5' -60.4 NC_005262.1 + 23868 0.66 0.461379
Target:  5'- -gUGCCGCC-CGuCCGGUCGUucguccACcuGCu -3'
miRNA:   3'- uaGCGGCGGuGC-GGCCAGCA------UGucCG- -5'
24061 5' -60.4 NC_005262.1 + 26564 0.66 0.461379
Target:  5'- -aCG-CGCUGCGCCaGuUCGcGCAGGCa -3'
miRNA:   3'- uaGCgGCGGUGCGGcC-AGCaUGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 55215 0.66 0.51032
Target:  5'- -cCGCCGUCGCuUC-GUCGcGCAGGCc -3'
miRNA:   3'- uaGCGGCGGUGcGGcCAGCaUGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 25973 0.66 0.51032
Target:  5'- uGUUGCCGCuCGCGCa-GUacacgGCGGGCa -3'
miRNA:   3'- -UAGCGGCG-GUGCGgcCAgca--UGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 2876 0.66 0.480671
Target:  5'- aAUUGCCGUUGCGCCGcuaUCGccuucgauCAGGCu -3'
miRNA:   3'- -UAGCGGCGGUGCGGCc--AGCau------GUCCG- -5'
24061 5' -60.4 NC_005262.1 + 58894 0.66 0.470975
Target:  5'- -cUGCUGCCGCGCUGcG-CGauCAGGCc -3'
miRNA:   3'- uaGCGGCGGUGCGGC-CaGCauGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 42979 0.66 0.470975
Target:  5'- cUgGCUGaaaaCCGCGCCGGgccgcuUCGUGuCGGGCc -3'
miRNA:   3'- uAgCGGC----GGUGCGGCC------AGCAU-GUCCG- -5'
24061 5' -60.4 NC_005262.1 + 3670 0.66 0.470975
Target:  5'- cUCGCgGCCGuCGCUGGcCGUgacgacggugauGCcGGCg -3'
miRNA:   3'- uAGCGgCGGU-GCGGCCaGCA------------UGuCCG- -5'
24061 5' -60.4 NC_005262.1 + 17925 0.66 0.470975
Target:  5'- gAUCGgCGCCgACGCCaacGG-CGaGCAGGUc -3'
miRNA:   3'- -UAGCgGCGG-UGCGG---CCaGCaUGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 23063 0.66 0.51032
Target:  5'- -gCGCCGCCGC-CCGuGcUCGa--GGGCg -3'
miRNA:   3'- uaGCGGCGGUGcGGC-C-AGCaugUCCG- -5'
24061 5' -60.4 NC_005262.1 + 46446 0.66 0.51032
Target:  5'- -gCGCCGcCCGCGCCGGacccgaaugcCGcGCcGGCc -3'
miRNA:   3'- uaGCGGC-GGUGCGGCCa---------GCaUGuCCG- -5'
24061 5' -60.4 NC_005262.1 + 21689 0.66 0.51032
Target:  5'- -gCGgCGCCGCGCUGc-UGUacGCGGGCa -3'
miRNA:   3'- uaGCgGCGGUGCGGCcaGCA--UGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 33392 0.66 0.461379
Target:  5'- -aCGCCGCC-CaGCUcaaGGUC--GCAGGCg -3'
miRNA:   3'- uaGCGGCGGuG-CGG---CCAGcaUGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.