miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24061 5' -60.4 NC_005262.1 + 46751 1.1 0.000351
Target:  5'- gAUCGCCGCCACGCCGGUCGUACAGGCg -3'
miRNA:   3'- -UAGCGGCGGUGCGGCCAGCAUGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 56747 0.81 0.045913
Target:  5'- cAUgGCCGCCGCGCUGG-CGU-CGGGCg -3'
miRNA:   3'- -UAgCGGCGGUGCGGCCaGCAuGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 39607 0.78 0.076944
Target:  5'- -cUGCCGCCucgggcgugaacuCGCCGGggaaCGUGCAGGCg -3'
miRNA:   3'- uaGCGGCGGu------------GCGGCCa---GCAUGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 46708 0.78 0.077795
Target:  5'- cUCGCgGCC-CGCCGcGUCG-ACGGGCg -3'
miRNA:   3'- uAGCGgCGGuGCGGC-CAGCaUGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 13863 0.77 0.096827
Target:  5'- -aCGCCauCCGgGCCGGUCGU-CAGGCg -3'
miRNA:   3'- uaGCGGc-GGUgCGGCCAGCAuGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 33847 0.76 0.113908
Target:  5'- uUCGCCGCCgcccGCGuCCgGGUCGUccuuCAGGCu -3'
miRNA:   3'- uAGCGGCGG----UGC-GG-CCAGCAu---GUCCG- -5'
24061 5' -60.4 NC_005262.1 + 22423 0.75 0.12347
Target:  5'- -gCGCCGCCugcuCGCCGGcaacccCGUGgAGGCg -3'
miRNA:   3'- uaGCGGCGGu---GCGGCCa-----GCAUgUCCG- -5'
24061 5' -60.4 NC_005262.1 + 17629 0.75 0.12347
Target:  5'- cUCgGCCGUCGCGUCGGagaucgCGUugAGGCg -3'
miRNA:   3'- uAG-CGGCGGUGCGGCCa-----GCAugUCCG- -5'
24061 5' -60.4 NC_005262.1 + 49051 0.74 0.144862
Target:  5'- cUCGCauagcaGCCGCGauGGUCGUcuuGCAGGCu -3'
miRNA:   3'- uAGCGg-----CGGUGCggCCAGCA---UGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 48016 0.74 0.152313
Target:  5'- gGUUGCCGCCGaagaugaggaaguCGCCGGcCG-GCAGGUg -3'
miRNA:   3'- -UAGCGGCGGU-------------GCGGCCaGCaUGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 58570 0.74 0.165218
Target:  5'- cGUCGaCGCCACGgCGaUCGUGCAGGa -3'
miRNA:   3'- -UAGCgGCGGUGCgGCcAGCAUGUCCg -5'
24061 5' -60.4 NC_005262.1 + 13443 0.73 0.174058
Target:  5'- -gCGCCGCU-CG-CGGUCGUcGCGGGCg -3'
miRNA:   3'- uaGCGGCGGuGCgGCCAGCA-UGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 508 0.73 0.193008
Target:  5'- -aCGCCgaGCCAgcaGCCGGcCGUcaaGCAGGCg -3'
miRNA:   3'- uaGCGG--CGGUg--CGGCCaGCA---UGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 40438 0.72 0.200056
Target:  5'- uUCGCCGCCGCGCgcuucacgccggccgUGGUCGagcgcgugcucgUGCGcGGCg -3'
miRNA:   3'- uAGCGGCGGUGCG---------------GCCAGC------------AUGU-CCG- -5'
24061 5' -60.4 NC_005262.1 + 17036 0.72 0.203145
Target:  5'- cGUCGCCGCCuguACGaCCGG-CGUGgcGGCg -3'
miRNA:   3'- -UAGCGGCGG---UGC-GGCCaGCAUguCCG- -5'
24061 5' -60.4 NC_005262.1 + 40988 0.72 0.208385
Target:  5'- aGUCGCggaGCCACauGCCGGUCGUaauccccucggACGGGa -3'
miRNA:   3'- -UAGCGg--CGGUG--CGGCCAGCA-----------UGUCCg -5'
24061 5' -60.4 NC_005262.1 + 48820 0.72 0.213742
Target:  5'- gGUCGUCGgCAaGCCGuUCGUugAGGCg -3'
miRNA:   3'- -UAGCGGCgGUgCGGCcAGCAugUCCG- -5'
24061 5' -60.4 NC_005262.1 + 52165 0.72 0.224809
Target:  5'- -gCGCCGCCGaGCCGaUgGUGCAGGg -3'
miRNA:   3'- uaGCGGCGGUgCGGCcAgCAUGUCCg -5'
24061 5' -60.4 NC_005262.1 + 57145 0.72 0.224809
Target:  5'- cAUCGCgGCCGUGUCGGUCG-ACAuccccGGCg -3'
miRNA:   3'- -UAGCGgCGGUGCGGCCAGCaUGU-----CCG- -5'
24061 5' -60.4 NC_005262.1 + 34022 0.71 0.229946
Target:  5'- -gCGCCGUCcggcacuACGCCGGgcgGUugAGGCg -3'
miRNA:   3'- uaGCGGCGG-------UGCGGCCag-CAugUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.