miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24061 5' -60.4 NC_005262.1 + 11977 0.66 0.470975
Target:  5'- -aCGUCgGCCGCGCUGaaGUCGUcGCcgAGGCg -3'
miRNA:   3'- uaGCGG-CGGUGCGGC--CAGCA-UG--UCCG- -5'
24061 5' -60.4 NC_005262.1 + 18028 0.66 0.470975
Target:  5'- uUCGCCGCgAUGCCGaucggcGUCGcguucGCGGGa -3'
miRNA:   3'- uAGCGGCGgUGCGGC------CAGCa----UGUCCg -5'
24061 5' -60.4 NC_005262.1 + 30937 0.66 0.470975
Target:  5'- -aCGCU-CgGCGCCGcaCGUGCGGGCc -3'
miRNA:   3'- uaGCGGcGgUGCGGCcaGCAUGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 13514 0.66 0.470975
Target:  5'- --gGCCGUCACGggcUCGGcCGgcGCGGGCg -3'
miRNA:   3'- uagCGGCGGUGC---GGCCaGCa-UGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 58894 0.66 0.470975
Target:  5'- -cUGCUGCCGCGCUGcG-CGauCAGGCc -3'
miRNA:   3'- uaGCGGCGGUGCGGC-CaGCauGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 42979 0.66 0.470975
Target:  5'- cUgGCUGaaaaCCGCGCCGGgccgcuUCGUGuCGGGCc -3'
miRNA:   3'- uAgCGGC----GGUGCGGCC------AGCAU-GUCCG- -5'
24061 5' -60.4 NC_005262.1 + 3670 0.66 0.470975
Target:  5'- cUCGCgGCCGuCGCUGGcCGUgacgacggugauGCcGGCg -3'
miRNA:   3'- uAGCGgCGGU-GCGGCCaGCA------------UGuCCG- -5'
24061 5' -60.4 NC_005262.1 + 17925 0.66 0.470975
Target:  5'- gAUCGgCGCCgACGCCaacGG-CGaGCAGGUc -3'
miRNA:   3'- -UAGCgGCGG-UGCGG---CCaGCaUGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 1470 0.66 0.461379
Target:  5'- -aCGCCGCC-CGCUcGUC-UGCcGGCg -3'
miRNA:   3'- uaGCGGCGGuGCGGcCAGcAUGuCCG- -5'
24061 5' -60.4 NC_005262.1 + 23868 0.66 0.461379
Target:  5'- -gUGCCGCC-CGuCCGGUCGUucguccACcuGCu -3'
miRNA:   3'- uaGCGGCGGuGC-GGCCAGCA------UGucCG- -5'
24061 5' -60.4 NC_005262.1 + 26564 0.66 0.461379
Target:  5'- -aCG-CGCUGCGCCaGuUCGcGCAGGCa -3'
miRNA:   3'- uaGCgGCGGUGCGGcC-AGCaUGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 34167 0.66 0.461379
Target:  5'- cGUCGCCGgCACGaaGGUCGagACGcuGCa -3'
miRNA:   3'- -UAGCGGCgGUGCggCCAGCa-UGUc-CG- -5'
24061 5' -60.4 NC_005262.1 + 33392 0.66 0.461379
Target:  5'- -aCGCCGCC-CaGCUcaaGGUC--GCAGGCg -3'
miRNA:   3'- uaGCGGCGGuG-CGG---CCAGcaUGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 51018 0.67 0.451887
Target:  5'- -cCGgCGaCCGCGCCGuGaUCGUgucgaacgACGGGCa -3'
miRNA:   3'- uaGCgGC-GGUGCGGC-C-AGCA--------UGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 2440 0.67 0.451887
Target:  5'- -cUGCCuGCCAcuCGCCGGUCuUAC-GGUg -3'
miRNA:   3'- uaGCGG-CGGU--GCGGCCAGcAUGuCCG- -5'
24061 5' -60.4 NC_005262.1 + 33662 0.67 0.451887
Target:  5'- --aGCgCGCCuCGCUGGUCGccgcgUACAcGGCc -3'
miRNA:   3'- uagCG-GCGGuGCGGCCAGC-----AUGU-CCG- -5'
24061 5' -60.4 NC_005262.1 + 2388 0.67 0.451887
Target:  5'- -cCGCCGCCuuCGCCucgcgcgcgaGGUCGUaguaGC-GGCu -3'
miRNA:   3'- uaGCGGCGGu-GCGG----------CCAGCA----UGuCCG- -5'
24061 5' -60.4 NC_005262.1 + 42167 0.67 0.451887
Target:  5'- -cCGUCGCCGuCGCCG-UCGcacucCGGGCa -3'
miRNA:   3'- uaGCGGCGGU-GCGGCcAGCau---GUCCG- -5'
24061 5' -60.4 NC_005262.1 + 58672 0.67 0.451887
Target:  5'- -gCGCCGCC-CGUCGcGcaugGCAGGCa -3'
miRNA:   3'- uaGCGGCGGuGCGGC-CagcaUGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 19098 0.67 0.451887
Target:  5'- cUCGCgcgcggcgaUGCCACGuUCGGaUCGggcGCGGGCg -3'
miRNA:   3'- uAGCG---------GCGGUGC-GGCC-AGCa--UGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.