miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24061 5' -60.4 NC_005262.1 + 508 0.73 0.193008
Target:  5'- -aCGCCgaGCCAgcaGCCGGcCGUcaaGCAGGCg -3'
miRNA:   3'- uaGCGG--CGGUg--CGGCCaGCA---UGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 1118 0.67 0.406106
Target:  5'- -cCGCCGCCucuUGCucugCGGcCGcUGCGGGCu -3'
miRNA:   3'- uaGCGGCGGu--GCG----GCCaGC-AUGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 1470 0.66 0.461379
Target:  5'- -aCGCCGCC-CGCUcGUC-UGCcGGCg -3'
miRNA:   3'- uaGCGGCGGuGCGGcCAGcAUGuCCG- -5'
24061 5' -60.4 NC_005262.1 + 2005 0.69 0.347145
Target:  5'- -gCGCCGCgcaggcgaaaaCGCGCUGGUCGguc-GGCg -3'
miRNA:   3'- uaGCGGCG-----------GUGCGGCCAGCauguCCG- -5'
24061 5' -60.4 NC_005262.1 + 2388 0.67 0.451887
Target:  5'- -cCGCCGCCuuCGCCucgcgcgcgaGGUCGUaguaGC-GGCu -3'
miRNA:   3'- uaGCGGCGGu-GCGG----------CCAGCA----UGuCCG- -5'
24061 5' -60.4 NC_005262.1 + 2440 0.67 0.451887
Target:  5'- -cUGCCuGCCAcuCGCCGGUCuUAC-GGUg -3'
miRNA:   3'- uaGCGG-CGGU--GCGGCCAGcAUGuCCG- -5'
24061 5' -60.4 NC_005262.1 + 2876 0.66 0.480671
Target:  5'- aAUUGCCGUUGCGCCGcuaUCGccuucgauCAGGCu -3'
miRNA:   3'- -UAGCGGCGGUGCGGCc--AGCau------GUCCG- -5'
24061 5' -60.4 NC_005262.1 + 2947 0.67 0.415029
Target:  5'- cAUUGCCucggccaucGCCACGCCGaUCGcgUAGGCc -3'
miRNA:   3'- -UAGCGG---------CGGUGCGGCcAGCauGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 3168 0.68 0.355183
Target:  5'- cUCGCCGCU-CGCCaG-CGUGCGcauGGCg -3'
miRNA:   3'- uAGCGGCGGuGCGGcCaGCAUGU---CCG- -5'
24061 5' -60.4 NC_005262.1 + 3670 0.66 0.470975
Target:  5'- cUCGCgGCCGuCGCUGGcCGUgacgacggugauGCcGGCg -3'
miRNA:   3'- uAGCGgCGGU-GCGGCCaGCA------------UGuCCG- -5'
24061 5' -60.4 NC_005262.1 + 3673 0.68 0.371648
Target:  5'- uUCGCCGCgACGCUGGcgcccUCGUGCccGa -3'
miRNA:   3'- uAGCGGCGgUGCGGCC-----AGCAUGucCg -5'
24061 5' -60.4 NC_005262.1 + 4708 0.67 0.43323
Target:  5'- aGUCGuuGCgCAagUGCgGGUUGgugaGCAGGCg -3'
miRNA:   3'- -UAGCggCG-GU--GCGgCCAGCa---UGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 5040 0.71 0.260948
Target:  5'- cUCGCCgGCCgGCGCCuGaUCGgcggGCAGGCc -3'
miRNA:   3'- uAGCGG-CGG-UGCGGcC-AGCa---UGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 5248 0.69 0.316308
Target:  5'- cUCGCCGCCuugguggaACGCC--UCGUGCAGcaGCa -3'
miRNA:   3'- uAGCGGCGG--------UGCGGccAGCAUGUC--CG- -5'
24061 5' -60.4 NC_005262.1 + 5348 0.71 0.230523
Target:  5'- -aCGCCGCgCACgccuGCCGGggCGUccuugACGGGCa -3'
miRNA:   3'- uaGCGGCG-GUG----CGGCCa-GCA-----UGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 6296 0.67 0.450943
Target:  5'- uUCGCCGCCuucuugcgcuCGCCGGccgccucUCGU-CGGcGCc -3'
miRNA:   3'- uAGCGGCGGu---------GCGGCC-------AGCAuGUC-CG- -5'
24061 5' -60.4 NC_005262.1 + 6527 0.71 0.254611
Target:  5'- cUCGCCGUCACGCUcG-CGgaucACGGGCu -3'
miRNA:   3'- uAGCGGCGGUGCGGcCaGCa---UGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 6562 0.66 0.490464
Target:  5'- uGUUGCCGCCgACGagCGG-CGcgauCAGGCu -3'
miRNA:   3'- -UAGCGGCGG-UGCg-GCCaGCau--GUCCG- -5'
24061 5' -60.4 NC_005262.1 + 7366 0.69 0.350345
Target:  5'- -gCGUCGCCACGaCGGUCGggccguccuugaucuUGCagAGGCu -3'
miRNA:   3'- uaGCGGCGGUGCgGCCAGC---------------AUG--UCCG- -5'
24061 5' -60.4 NC_005262.1 + 7866 0.66 0.51032
Target:  5'- -cCGCCGCCcucgauCGCCGGacggucgaCGUACuGcGCg -3'
miRNA:   3'- uaGCGGCGGu-----GCGGCCa-------GCAUGuC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.