miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24061 5' -60.4 NC_005262.1 + 7366 0.69 0.350345
Target:  5'- -gCGUCGCCACGaCGGUCGggccguccuugaucuUGCagAGGCu -3'
miRNA:   3'- uaGCGGCGGUGCgGCCAGC---------------AUG--UCCG- -5'
24061 5' -60.4 NC_005262.1 + 41103 0.7 0.274006
Target:  5'- -cCGCCgGCCACGUCGaGaUCGUGCGcgucacGGCg -3'
miRNA:   3'- uaGCGG-CGGUGCGGC-C-AGCAUGU------CCG- -5'
24061 5' -60.4 NC_005262.1 + 50801 0.7 0.290359
Target:  5'- gGUCGCCGagggcauggagcgcuUCGCGCCGGag--ACGGGCa -3'
miRNA:   3'- -UAGCGGC---------------GGUGCGGCCagcaUGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 11572 0.7 0.294566
Target:  5'- -gCGCUGCUAUGCCGGcggCGgcCAGcGCu -3'
miRNA:   3'- uaGCGGCGGUGCGGCCa--GCauGUC-CG- -5'
24061 5' -60.4 NC_005262.1 + 10983 0.69 0.323819
Target:  5'- -gCGCCGggaACGCCGGUCGcgcucGCAcGGCu -3'
miRNA:   3'- uaGCGGCgg-UGCGGCCAGCa----UGU-CCG- -5'
24061 5' -60.4 NC_005262.1 + 62101 0.69 0.329156
Target:  5'- cGUCGCCGCCGCGgcaaCCGcGUCGcggAUgaacgacgacuuugAGGCg -3'
miRNA:   3'- -UAGCGGCGGUGC----GGC-CAGCa--UG--------------UCCG- -5'
24061 5' -60.4 NC_005262.1 + 9139 0.69 0.339238
Target:  5'- -cCGgCGCCGgGCCGGUCGgaaUGCGgaucacccGGCg -3'
miRNA:   3'- uaGCgGCGGUgCGGCCAGC---AUGU--------CCG- -5'
24061 5' -60.4 NC_005262.1 + 55653 0.69 0.339238
Target:  5'- cGUgGCCGCguccggCACGCCGGUCacgaacacgAUGGGCg -3'
miRNA:   3'- -UAgCGGCG------GUGCGGCCAGca-------UGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 52943 0.69 0.347145
Target:  5'- -gCGCCGCCugggcuuCGCCGG-CGgcaAGGUg -3'
miRNA:   3'- uaGCGGCGGu------GCGGCCaGCaugUCCG- -5'
24061 5' -60.4 NC_005262.1 + 14160 0.71 0.260948
Target:  5'- gAUUGuCCGCCGCGCCGaggaGUGC-GGCa -3'
miRNA:   3'- -UAGC-GGCGGUGCGGCcag-CAUGuCCG- -5'
24061 5' -60.4 NC_005262.1 + 5040 0.71 0.260948
Target:  5'- cUCGCCgGCCgGCGCCuGaUCGgcggGCAGGCc -3'
miRNA:   3'- uAGCGG-CGG-UGCGGcC-AGCa---UGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 59700 0.71 0.254611
Target:  5'- -gUGCCGCCACGCgGG-CGcUACGucgccGGCa -3'
miRNA:   3'- uaGCGGCGGUGCGgCCaGC-AUGU-----CCG- -5'
24061 5' -60.4 NC_005262.1 + 56747 0.81 0.045913
Target:  5'- cAUgGCCGCCGCGCUGG-CGU-CGGGCg -3'
miRNA:   3'- -UAgCGGCGGUGCGGCCaGCAuGUCCG- -5'
24061 5' -60.4 NC_005262.1 + 22423 0.75 0.12347
Target:  5'- -gCGCCGCCugcuCGCCGGcaacccCGUGgAGGCg -3'
miRNA:   3'- uaGCGGCGGu---GCGGCCa-----GCAUgUCCG- -5'
24061 5' -60.4 NC_005262.1 + 48820 0.72 0.213742
Target:  5'- gGUCGUCGgCAaGCCGuUCGUugAGGCg -3'
miRNA:   3'- -UAGCGGCgGUgCGGCcAGCAugUCCG- -5'
24061 5' -60.4 NC_005262.1 + 57145 0.72 0.224809
Target:  5'- cAUCGCgGCCGUGUCGGUCG-ACAuccccGGCg -3'
miRNA:   3'- -UAGCGgCGGUGCGGCCAGCaUGU-----CCG- -5'
24061 5' -60.4 NC_005262.1 + 51115 0.71 0.230523
Target:  5'- gAUCGUgcuCGaCGCGCCGGUCG-ACAaGGCg -3'
miRNA:   3'- -UAGCG---GCgGUGCGGCCAGCaUGU-CCG- -5'
24061 5' -60.4 NC_005262.1 + 49784 0.71 0.242318
Target:  5'- -cCGCUGCCGCGCCGGaCGccccUGCAccguccGGCc -3'
miRNA:   3'- uaGCGGCGGUGCGGCCaGC----AUGU------CCG- -5'
24061 5' -60.4 NC_005262.1 + 22238 0.71 0.248402
Target:  5'- -gCGCCGcCCACGCCGGcCGgcCuGcGCa -3'
miRNA:   3'- uaGCGGC-GGUGCGGCCaGCauGuC-CG- -5'
24061 5' -60.4 NC_005262.1 + 6527 0.71 0.254611
Target:  5'- cUCGCCGUCACGCUcG-CGgaucACGGGCu -3'
miRNA:   3'- uAGCGGCGGUGCGGcCaGCa---UGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.