miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24062 5' -62.3 NC_005262.1 + 58846 0.66 0.425973
Target:  5'- uUCGgcACGCaGAUCGGCGAcgucacgccGGCGCagcccGCGCg -3'
miRNA:   3'- cAGC--UGCG-CUGGCCGCU---------CCGCG-----CGUG- -5'
24062 5' -62.3 NC_005262.1 + 32898 0.66 0.425973
Target:  5'- cGUCGGCcaaGCCGGC--GGCGuCGCACg -3'
miRNA:   3'- -CAGCUGcgcUGGCCGcuCCGC-GCGUG- -5'
24062 5' -62.3 NC_005262.1 + 32820 0.66 0.425973
Target:  5'- cGUCGGCcucauguccgGCGACguCGGCGAcaagguuucGGCcCGCACg -3'
miRNA:   3'- -CAGCUG----------CGCUG--GCCGCU---------CCGcGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 48710 0.66 0.425973
Target:  5'- uUCGAguUGCcuCCGGCccGAGGCGgGUACa -3'
miRNA:   3'- cAGCU--GCGcuGGCCG--CUCCGCgCGUG- -5'
24062 5' -62.3 NC_005262.1 + 20241 0.66 0.425973
Target:  5'- cGUCuGCGCGAggaauCCGGaCGgcAGGCG-GCACa -3'
miRNA:   3'- -CAGcUGCGCU-----GGCC-GC--UCCGCgCGUG- -5'
24062 5' -62.3 NC_005262.1 + 21369 0.66 0.417041
Target:  5'- uUCGugauguUGCGGCCGGCu-GGCGC-CGCc -3'
miRNA:   3'- cAGCu-----GCGCUGGCCGcuCCGCGcGUG- -5'
24062 5' -62.3 NC_005262.1 + 43346 0.66 0.417041
Target:  5'- -gCGGCGauCGACgCGGCGAaG-GCGCACa -3'
miRNA:   3'- caGCUGC--GCUG-GCCGCUcCgCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 50392 0.66 0.417041
Target:  5'- -gCGACGCGaACC-GCGcGGCGaucaGCGCc -3'
miRNA:   3'- caGCUGCGC-UGGcCGCuCCGCg---CGUG- -5'
24062 5' -62.3 NC_005262.1 + 16464 0.66 0.414384
Target:  5'- aGUCGAaaucgcacguauccCGCuGCCggacgagcugGGCGAGGCGCuggGCGCu -3'
miRNA:   3'- -CAGCU--------------GCGcUGG----------CCGCUCCGCG---CGUG- -5'
24062 5' -62.3 NC_005262.1 + 6092 0.66 0.411737
Target:  5'- cGUCGugGCGGCCuaccgaaagcaccuuGccGCGcccGGCGCGCGa -3'
miRNA:   3'- -CAGCugCGCUGG---------------C--CGCu--CCGCGCGUg -5'
24062 5' -62.3 NC_005262.1 + 49484 0.66 0.408224
Target:  5'- ---aGCGCGcauucuCCGGCGGuGCGCGCAg -3'
miRNA:   3'- cagcUGCGCu-----GGCCGCUcCGCGCGUg -5'
24062 5' -62.3 NC_005262.1 + 29955 0.66 0.408224
Target:  5'- --gGACGCGGgCGGCGgcgaAGGUGCcaaaucugGCACc -3'
miRNA:   3'- cagCUGCGCUgGCCGC----UCCGCG--------CGUG- -5'
24062 5' -62.3 NC_005262.1 + 61288 0.66 0.408224
Target:  5'- aUCGGCGCGGCCagccucGCGGGGUcggauauggGCaGCAUg -3'
miRNA:   3'- cAGCUGCGCUGGc-----CGCUCCG---------CG-CGUG- -5'
24062 5' -62.3 NC_005262.1 + 39710 0.66 0.408224
Target:  5'- cGUCGACaaugguGUGAUCGcGCaGcAGGCGCaGCGCa -3'
miRNA:   3'- -CAGCUG------CGCUGGC-CG-C-UCCGCG-CGUG- -5'
24062 5' -62.3 NC_005262.1 + 12413 0.66 0.408224
Target:  5'- gGUCaGGCGCGgccuugGCCGGCGucGCGgacgGCGCg -3'
miRNA:   3'- -CAG-CUGCGC------UGGCCGCucCGCg---CGUG- -5'
24062 5' -62.3 NC_005262.1 + 47390 0.66 0.408224
Target:  5'- -gCGGCgcagaaucccgGCGGCCGGcCGGGGCGgGUuCa -3'
miRNA:   3'- caGCUG-----------CGCUGGCC-GCUCCGCgCGuG- -5'
24062 5' -62.3 NC_005262.1 + 57610 0.66 0.408224
Target:  5'- uUCcGCGCcuauGACC-GCGAGGCGCaggaGCGCg -3'
miRNA:   3'- cAGcUGCG----CUGGcCGCUCCGCG----CGUG- -5'
24062 5' -62.3 NC_005262.1 + 21810 0.66 0.408224
Target:  5'- uUCGuCGCGuucuGCgCGGCGgugucaggcaacAGGCGCgGCACa -3'
miRNA:   3'- cAGCuGCGC----UG-GCCGC------------UCCGCG-CGUG- -5'
24062 5' -62.3 NC_005262.1 + 43872 0.66 0.408224
Target:  5'- cUCGGCGCGAUCGcGCGcauGGC-CGaCAUg -3'
miRNA:   3'- cAGCUGCGCUGGC-CGCu--CCGcGC-GUG- -5'
24062 5' -62.3 NC_005262.1 + 18034 0.66 0.399524
Target:  5'- -gCGAUGcCGAUCGGCGucGCGUuCGCg -3'
miRNA:   3'- caGCUGC-GCUGGCCGCucCGCGcGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.