Results 1 - 20 of 162 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24062 | 5' | -62.3 | NC_005262.1 | + | 44129 | 0.66 | 0.390944 |
Target: 5'- aUCGGCGUucccgcguuccGGCCGGac--GCGCGCGCg -3' miRNA: 3'- cAGCUGCG-----------CUGGCCgcucCGCGCGUG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 49155 | 0.66 | 0.390944 |
Target: 5'- gGUgGGCGUGcaggccgcAUCGGCcgcagcGGCGCGCACg -3' miRNA: 3'- -CAgCUGCGC--------UGGCCGcu----CCGCGCGUG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 32820 | 0.66 | 0.425973 |
Target: 5'- cGUCGGCcucauguccgGCGACguCGGCGAcaagguuucGGCcCGCACg -3' miRNA: 3'- -CAGCUG----------CGCUG--GCCGCU---------CCGcGCGUG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 55925 | 0.66 | 0.382485 |
Target: 5'- cGUCGAC-CGuCCGGCGAucgagGGCG-GCGg -3' miRNA: 3'- -CAGCUGcGCuGGCCGCU-----CCGCgCGUg -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 32898 | 0.66 | 0.425973 |
Target: 5'- cGUCGGCcaaGCCGGC--GGCGuCGCACg -3' miRNA: 3'- -CAGCUGcgcUGGCCGcuCCGC-GCGUG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 39710 | 0.66 | 0.408224 |
Target: 5'- cGUCGACaaugguGUGAUCGcGCaGcAGGCGCaGCGCa -3' miRNA: 3'- -CAGCUG------CGCUGGC-CG-C-UCCGCG-CGUG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 61288 | 0.66 | 0.408224 |
Target: 5'- aUCGGCGCGGCCagccucGCGGGGUcggauauggGCaGCAUg -3' miRNA: 3'- cAGCUGCGCUGGc-----CGCUCCG---------CG-CGUG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 43346 | 0.66 | 0.417041 |
Target: 5'- -gCGGCGauCGACgCGGCGAaG-GCGCACa -3' miRNA: 3'- caGCUGC--GCUG-GCCGCUcCgCGCGUG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 58846 | 0.66 | 0.425973 |
Target: 5'- uUCGgcACGCaGAUCGGCGAcgucacgccGGCGCagcccGCGCg -3' miRNA: 3'- cAGC--UGCG-CUGGCCGCU---------CCGCG-----CGUG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 48710 | 0.66 | 0.425973 |
Target: 5'- uUCGAguUGCcuCCGGCccGAGGCGgGUACa -3' miRNA: 3'- cAGCU--GCGcuGGCCG--CUCCGCgCGUG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 20241 | 0.66 | 0.425973 |
Target: 5'- cGUCuGCGCGAggaauCCGGaCGgcAGGCG-GCACa -3' miRNA: 3'- -CAGcUGCGCU-----GGCC-GC--UCCGCgCGUG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 49484 | 0.66 | 0.408224 |
Target: 5'- ---aGCGCGcauucuCCGGCGGuGCGCGCAg -3' miRNA: 3'- cagcUGCGCu-----GGCCGCUcCGCGCGUg -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 10976 | 0.66 | 0.390944 |
Target: 5'- uGUCGGCGCG-CCGG-GAacgccGGuCGCGCucGCa -3' miRNA: 3'- -CAGCUGCGCuGGCCgCU-----CC-GCGCG--UG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 29955 | 0.66 | 0.408224 |
Target: 5'- --gGACGCGGgCGGCGgcgaAGGUGCcaaaucugGCACc -3' miRNA: 3'- cagCUGCGCUgGCCGC----UCCGCG--------CGUG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 43872 | 0.66 | 0.408224 |
Target: 5'- cUCGGCGCGAUCGcGCGcauGGC-CGaCAUg -3' miRNA: 3'- cAGCUGCGCUGGC-CGCu--CCGcGC-GUG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 49322 | 0.66 | 0.381645 |
Target: 5'- --aGGCGCagggcauGACCGaCGAgcaGGCGCGCGCc -3' miRNA: 3'- cagCUGCG-------CUGGCcGCU---CCGCGCGUG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 33387 | 0.66 | 0.382485 |
Target: 5'- cGUCGACGCcGCCcagcucaaGGuCGcAGGCGC-CACg -3' miRNA: 3'- -CAGCUGCGcUGG--------CC-GC-UCCGCGcGUG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 50392 | 0.66 | 0.417041 |
Target: 5'- -gCGACGCGaACC-GCGcGGCGaucaGCGCc -3' miRNA: 3'- caGCUGCGC-UGGcCGCuCCGCg---CGUG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 12918 | 0.66 | 0.390092 |
Target: 5'- --gGACGaCGACaaccugcgCGGCGcgcugaaGGGCGUGCGCg -3' miRNA: 3'- cagCUGC-GCUG--------GCCGC-------UCCGCGCGUG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 16464 | 0.66 | 0.414384 |
Target: 5'- aGUCGAaaucgcacguauccCGCuGCCggacgagcugGGCGAGGCGCuggGCGCu -3' miRNA: 3'- -CAGCU--------------GCGcUGG----------CCGCUCCGCG---CGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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