miRNA display CGI


Results 21 - 40 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24062 5' -62.3 NC_005262.1 + 20241 0.66 0.425973
Target:  5'- cGUCuGCGCGAggaauCCGGaCGgcAGGCG-GCACa -3'
miRNA:   3'- -CAGcUGCGCU-----GGCC-GC--UCCGCgCGUG- -5'
24062 5' -62.3 NC_005262.1 + 48710 0.66 0.425973
Target:  5'- uUCGAguUGCcuCCGGCccGAGGCGgGUACa -3'
miRNA:   3'- cAGCU--GCGcuGGCCG--CUCCGCgCGUG- -5'
24062 5' -62.3 NC_005262.1 + 61288 0.66 0.408224
Target:  5'- aUCGGCGCGGCCagccucGCGGGGUcggauauggGCaGCAUg -3'
miRNA:   3'- cAGCUGCGCUGGc-----CGCUCCG---------CG-CGUG- -5'
24062 5' -62.3 NC_005262.1 + 57610 0.66 0.408224
Target:  5'- uUCcGCGCcuauGACC-GCGAGGCGCaggaGCGCg -3'
miRNA:   3'- cAGcUGCG----CUGGcCGCUCCGCG----CGUG- -5'
24062 5' -62.3 NC_005262.1 + 21810 0.66 0.408224
Target:  5'- uUCGuCGCGuucuGCgCGGCGgugucaggcaacAGGCGCgGCACa -3'
miRNA:   3'- cAGCuGCGC----UG-GCCGC------------UCCGCG-CGUG- -5'
24062 5' -62.3 NC_005262.1 + 43872 0.66 0.408224
Target:  5'- cUCGGCGCGAUCGcGCGcauGGC-CGaCAUg -3'
miRNA:   3'- cAGCUGCGCUGGC-CGCu--CCGcGC-GUG- -5'
24062 5' -62.3 NC_005262.1 + 58846 0.66 0.425973
Target:  5'- uUCGgcACGCaGAUCGGCGAcgucacgccGGCGCagcccGCGCg -3'
miRNA:   3'- cAGC--UGCG-CUGGCCGCU---------CCGCG-----CGUG- -5'
24062 5' -62.3 NC_005262.1 + 21369 0.66 0.417041
Target:  5'- uUCGugauguUGCGGCCGGCu-GGCGC-CGCc -3'
miRNA:   3'- cAGCu-----GCGCUGGCCGcuCCGCGcGUG- -5'
24062 5' -62.3 NC_005262.1 + 6092 0.66 0.411737
Target:  5'- cGUCGugGCGGCCuaccgaaagcaccuuGccGCGcccGGCGCGCGa -3'
miRNA:   3'- -CAGCugCGCUGG---------------C--CGCu--CCGCGCGUg -5'
24062 5' -62.3 NC_005262.1 + 7288 0.66 0.388393
Target:  5'- -aCGGCGCGuccagaugcuccucGCUGuaGAGGCGCuucuGCACg -3'
miRNA:   3'- caGCUGCGC--------------UGGCcgCUCCGCG----CGUG- -5'
24062 5' -62.3 NC_005262.1 + 18034 0.66 0.399524
Target:  5'- -gCGAUGcCGAUCGGCGucGCGUuCGCg -3'
miRNA:   3'- caGCUGC-GCUGGCCGCucCGCGcGUG- -5'
24062 5' -62.3 NC_005262.1 + 47390 0.66 0.408224
Target:  5'- -gCGGCgcagaaucccgGCGGCCGGcCGGGGCGgGUuCa -3'
miRNA:   3'- caGCUG-----------CGCUGGCC-GCUCCGCgCGuG- -5'
24062 5' -62.3 NC_005262.1 + 9365 0.66 0.381645
Target:  5'- gGUCGGCGCGcgcggcggccugcGCCuccGCGAGcuUGCGCACg -3'
miRNA:   3'- -CAGCUGCGC-------------UGGc--CGCUCc-GCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 36523 0.67 0.342053
Target:  5'- cGUUGACGguCGGCgCGGCGAcugggauuaucGG-GCGCACg -3'
miRNA:   3'- -CAGCUGC--GCUG-GCCGCU-----------CCgCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 36292 0.67 0.361068
Target:  5'- -gCGACGCGAacaccucggucgacuUCGGUGGGGgGCcgguGCGCu -3'
miRNA:   3'- caGCUGCGCU---------------GGCCGCUCCgCG----CGUG- -5'
24062 5' -62.3 NC_005262.1 + 182 0.67 0.365936
Target:  5'- uGUCGuacagcaGCGuGCCGGUGAcgauccgcaGcGCGCGCACg -3'
miRNA:   3'- -CAGCug-----CGC-UGGCCGCU---------C-CGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 21349 0.67 0.374148
Target:  5'- aUCGAgGCGGCCaaGGCc--GCGCGCAg -3'
miRNA:   3'- cAGCUgCGCUGG--CCGcucCGCGCGUg -5'
24062 5' -62.3 NC_005262.1 + 29146 0.67 0.374148
Target:  5'- aUCGACGaGGCCGaGU--GGCGCGCGa -3'
miRNA:   3'- cAGCUGCgCUGGC-CGcuCCGCGCGUg -5'
24062 5' -62.3 NC_005262.1 + 49360 0.67 0.374148
Target:  5'- cUCGcUGaCGACuCGGCGAcGCGCGCGu -3'
miRNA:   3'- cAGCuGC-GCUG-GCCGCUcCGCGCGUg -5'
24062 5' -62.3 NC_005262.1 + 15876 0.67 0.334346
Target:  5'- cUCGACGCGA-UGGCGcugauccgccGCGUGCGCg -3'
miRNA:   3'- cAGCUGCGCUgGCCGCuc--------CGCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.