Results 1 - 20 of 162 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24062 | 5' | -62.3 | NC_005262.1 | + | 47149 | 1.07 | 0.000372 |
Target: 5'- gGUCGACGCGACCGGCGAGGCGCGCACc -3' miRNA: 3'- -CAGCUGCGCUGGCCGCUCCGCGCGUG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 24382 | 0.81 | 0.039462 |
Target: 5'- uGUCGACGCcaaACCGGC--GGCGCGCACg -3' miRNA: 3'- -CAGCUGCGc--UGGCCGcuCCGCGCGUG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 46304 | 0.79 | 0.054917 |
Target: 5'- aUCGACGCG-UCGcGCGcGGCGCGCGCu -3' miRNA: 3'- cAGCUGCGCuGGC-CGCuCCGCGCGUG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 10550 | 0.79 | 0.053431 |
Target: 5'- -cCGACGCGACCGGCc--GCGCGCAg -3' miRNA: 3'- caGCUGCGCUGGCCGcucCGCGCGUg -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 52812 | 0.78 | 0.058011 |
Target: 5'- -gCGAgCGCGACCGGCGuucccGGCGCGC-Cg -3' miRNA: 3'- caGCU-GCGCUGGCCGCu----CCGCGCGuG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 5157 | 0.77 | 0.071961 |
Target: 5'- cUCGGCGCGcugaucggugacgGCCGGCGucgcGGGCGCGgGCg -3' miRNA: 3'- cAGCUGCGC-------------UGGCCGC----UCCGCGCgUG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 10455 | 0.77 | 0.070222 |
Target: 5'- uUCG-CGCGGUCGGCGAgguagcGGCGCGCGCg -3' miRNA: 3'- cAGCuGCGCUGGCCGCU------CCGCGCGUG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 12574 | 0.76 | 0.092027 |
Target: 5'- cGUCGAgcugcugcUGCcGCCGGCGAGGCGuCGCGg -3' miRNA: 3'- -CAGCU--------GCGcUGGCCGCUCCGC-GCGUg -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 53835 | 0.76 | 0.092027 |
Target: 5'- -cUGACGC-ACCGGCGcGGCGCGgACg -3' miRNA: 3'- caGCUGCGcUGGCCGCuCCGCGCgUG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 36115 | 0.75 | 0.10521 |
Target: 5'- uUCGacgcuGCGCGAUaCGGCGAGGCGaGCACc -3' miRNA: 3'- cAGC-----UGCGCUG-GCCGCUCCGCgCGUG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 30124 | 0.74 | 0.117014 |
Target: 5'- uUUGGCcguguacgcgGCGACCaGCGAGGCGCGCuCg -3' miRNA: 3'- cAGCUG----------CGCUGGcCGCUCCGCGCGuG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 52398 | 0.74 | 0.113952 |
Target: 5'- -gCGGCGCGGCuuCGGCGuGGagcCGCGCGCg -3' miRNA: 3'- caGCUGCGCUG--GCCGCuCC---GCGCGUG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 30426 | 0.74 | 0.117014 |
Target: 5'- cGUCGACGaucaCGGCCGGCGGguugucgaucGGCG-GCACg -3' miRNA: 3'- -CAGCUGC----GCUGGCCGCU----------CCGCgCGUG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 13801 | 0.74 | 0.113952 |
Target: 5'- -cCGGCGCGGCuucauCGGCGGGaGCGgGCGCc -3' miRNA: 3'- caGCUGCGCUG-----GCCGCUC-CGCgCGUG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 46175 | 0.74 | 0.120153 |
Target: 5'- -cCGACGCGA-CGGcCGAGGCGaucaCGCACu -3' miRNA: 3'- caGCUGCGCUgGCC-GCUCCGC----GCGUG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 11645 | 0.74 | 0.120153 |
Target: 5'- cUCGGCgGCG-CCGGCGucGCGCuGCACg -3' miRNA: 3'- cAGCUG-CGCuGGCCGCucCGCG-CGUG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 17091 | 0.74 | 0.120153 |
Target: 5'- cGUCGACGCGGCgGGCcgcGAGGagguccacCGCGCGg -3' miRNA: 3'- -CAGCUGCGCUGgCCG---CUCC--------GCGCGUg -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 60848 | 0.74 | 0.113952 |
Target: 5'- aUCGGCGUGGCgaUGGcCGAGGCaauGCGCGCg -3' miRNA: 3'- cAGCUGCGCUG--GCC-GCUCCG---CGCGUG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 52583 | 0.73 | 0.13705 |
Target: 5'- cUCGGCGCGGCUcucgaucuugcaGGU--GGCGCGCACg -3' miRNA: 3'- cAGCUGCGCUGG------------CCGcuCCGCGCGUG- -5' |
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24062 | 5' | -62.3 | NC_005262.1 | + | 36722 | 0.73 | 0.144402 |
Target: 5'- cGUUGugGgGGCUGGCGccGCGgGCGCa -3' miRNA: 3'- -CAGCugCgCUGGCCGCucCGCgCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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