miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24062 5' -62.3 NC_005262.1 + 47149 1.07 0.000372
Target:  5'- gGUCGACGCGACCGGCGAGGCGCGCACc -3'
miRNA:   3'- -CAGCUGCGCUGGCCGCUCCGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 24382 0.81 0.039462
Target:  5'- uGUCGACGCcaaACCGGC--GGCGCGCACg -3'
miRNA:   3'- -CAGCUGCGc--UGGCCGcuCCGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 10550 0.79 0.053431
Target:  5'- -cCGACGCGACCGGCc--GCGCGCAg -3'
miRNA:   3'- caGCUGCGCUGGCCGcucCGCGCGUg -5'
24062 5' -62.3 NC_005262.1 + 46304 0.79 0.054917
Target:  5'- aUCGACGCG-UCGcGCGcGGCGCGCGCu -3'
miRNA:   3'- cAGCUGCGCuGGC-CGCuCCGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 52812 0.78 0.058011
Target:  5'- -gCGAgCGCGACCGGCGuucccGGCGCGC-Cg -3'
miRNA:   3'- caGCU-GCGCUGGCCGCu----CCGCGCGuG- -5'
24062 5' -62.3 NC_005262.1 + 10455 0.77 0.070222
Target:  5'- uUCG-CGCGGUCGGCGAgguagcGGCGCGCGCg -3'
miRNA:   3'- cAGCuGCGCUGGCCGCU------CCGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 5157 0.77 0.071961
Target:  5'- cUCGGCGCGcugaucggugacgGCCGGCGucgcGGGCGCGgGCg -3'
miRNA:   3'- cAGCUGCGC-------------UGGCCGC----UCCGCGCgUG- -5'
24062 5' -62.3 NC_005262.1 + 53835 0.76 0.092027
Target:  5'- -cUGACGC-ACCGGCGcGGCGCGgACg -3'
miRNA:   3'- caGCUGCGcUGGCCGCuCCGCGCgUG- -5'
24062 5' -62.3 NC_005262.1 + 12574 0.76 0.092027
Target:  5'- cGUCGAgcugcugcUGCcGCCGGCGAGGCGuCGCGg -3'
miRNA:   3'- -CAGCU--------GCGcUGGCCGCUCCGC-GCGUg -5'
24062 5' -62.3 NC_005262.1 + 36115 0.75 0.10521
Target:  5'- uUCGacgcuGCGCGAUaCGGCGAGGCGaGCACc -3'
miRNA:   3'- cAGC-----UGCGCUG-GCCGCUCCGCgCGUG- -5'
24062 5' -62.3 NC_005262.1 + 52398 0.74 0.113952
Target:  5'- -gCGGCGCGGCuuCGGCGuGGagcCGCGCGCg -3'
miRNA:   3'- caGCUGCGCUG--GCCGCuCC---GCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 60848 0.74 0.113952
Target:  5'- aUCGGCGUGGCgaUGGcCGAGGCaauGCGCGCg -3'
miRNA:   3'- cAGCUGCGCUG--GCC-GCUCCG---CGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 13801 0.74 0.113952
Target:  5'- -cCGGCGCGGCuucauCGGCGGGaGCGgGCGCc -3'
miRNA:   3'- caGCUGCGCUG-----GCCGCUC-CGCgCGUG- -5'
24062 5' -62.3 NC_005262.1 + 30124 0.74 0.117014
Target:  5'- uUUGGCcguguacgcgGCGACCaGCGAGGCGCGCuCg -3'
miRNA:   3'- cAGCUG----------CGCUGGcCGCUCCGCGCGuG- -5'
24062 5' -62.3 NC_005262.1 + 30426 0.74 0.117014
Target:  5'- cGUCGACGaucaCGGCCGGCGGguugucgaucGGCG-GCACg -3'
miRNA:   3'- -CAGCUGC----GCUGGCCGCU----------CCGCgCGUG- -5'
24062 5' -62.3 NC_005262.1 + 17091 0.74 0.120153
Target:  5'- cGUCGACGCGGCgGGCcgcGAGGagguccacCGCGCGg -3'
miRNA:   3'- -CAGCUGCGCUGgCCG---CUCC--------GCGCGUg -5'
24062 5' -62.3 NC_005262.1 + 46175 0.74 0.120153
Target:  5'- -cCGACGCGA-CGGcCGAGGCGaucaCGCACu -3'
miRNA:   3'- caGCUGCGCUgGCC-GCUCCGC----GCGUG- -5'
24062 5' -62.3 NC_005262.1 + 11645 0.74 0.120153
Target:  5'- cUCGGCgGCG-CCGGCGucGCGCuGCACg -3'
miRNA:   3'- cAGCUG-CGCuGGCCGCucCGCG-CGUG- -5'
24062 5' -62.3 NC_005262.1 + 52583 0.73 0.13705
Target:  5'- cUCGGCGCGGCUcucgaucuugcaGGU--GGCGCGCACg -3'
miRNA:   3'- cAGCUGCGCUGG------------CCGcuCCGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 22701 0.73 0.140315
Target:  5'- cUCGACGUGGCCGGCGGcguugacGaGCGUGC-Cg -3'
miRNA:   3'- cAGCUGCGCUGGCCGCU-------C-CGCGCGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.