miRNA display CGI


Results 21 - 40 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24062 5' -62.3 NC_005262.1 + 36722 0.73 0.144402
Target:  5'- cGUUGugGgGGCUGGCGccGCGgGCGCa -3'
miRNA:   3'- -CAGCugCgCUGGCCGCucCGCgCGUG- -5'
24062 5' -62.3 NC_005262.1 + 38547 0.73 0.152113
Target:  5'- -gCGGCGCaggaGCCGGCGuuGCGCGCGg -3'
miRNA:   3'- caGCUGCGc---UGGCCGCucCGCGCGUg -5'
24062 5' -62.3 NC_005262.1 + 13523 0.72 0.156107
Target:  5'- --gGGCuCGGCCGGCGcGGGCGCGCc- -3'
miRNA:   3'- cagCUGcGCUGGCCGC-UCCGCGCGug -5'
24062 5' -62.3 NC_005262.1 + 12273 0.72 0.156107
Target:  5'- uGUCGAuCGCGGCCGGCGAGcCGaGCu- -3'
miRNA:   3'- -CAGCU-GCGCUGGCCGCUCcGCgCGug -5'
24062 5' -62.3 NC_005262.1 + 24328 0.72 0.156107
Target:  5'- gGUCGGCGCGAUCGacaugcggcucuGCGucGGCGCGCc- -3'
miRNA:   3'- -CAGCUGCGCUGGC------------CGCu-CCGCGCGug -5'
24062 5' -62.3 NC_005262.1 + 10095 0.72 0.16438
Target:  5'- uUCGACGCGGCCGG-GuucuGCGCGCcCg -3'
miRNA:   3'- cAGCUGCGCUGGCCgCuc--CGCGCGuG- -5'
24062 5' -62.3 NC_005262.1 + 17359 0.72 0.173045
Target:  5'- -cCGGCGCGGgCGGCGcGGCGgGCc- -3'
miRNA:   3'- caGCUGCGCUgGCCGCuCCGCgCGug -5'
24062 5' -62.3 NC_005262.1 + 5080 0.72 0.173045
Target:  5'- -gCGGCgcguGCGACCGGCucGGcGGUGCGCGCc -3'
miRNA:   3'- caGCUG----CGCUGGCCG--CU-CCGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 35357 0.72 0.173045
Target:  5'- -aCGACGCaccGACCGGCGGaaauaugcuGGCGCaCGCg -3'
miRNA:   3'- caGCUGCG---CUGGCCGCU---------CCGCGcGUG- -5'
24062 5' -62.3 NC_005262.1 + 46722 0.72 0.177076
Target:  5'- cGUCGACGgGcgcgccuAUCGGCGccGUGCGCGCg -3'
miRNA:   3'- -CAGCUGCgC-------UGGCCGCucCGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 57277 0.72 0.177529
Target:  5'- -gCGAgCGUGA-CGGCGAGGUcgGCGCGCu -3'
miRNA:   3'- caGCU-GCGCUgGCCGCUCCG--CGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 58902 0.72 0.177529
Target:  5'- -gCGcuGCGCGaucagGCCGGCGGcccgaccgauGGCGCGCGCu -3'
miRNA:   3'- caGC--UGCGC-----UGGCCGCU----------CCGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 42177 0.71 0.186807
Target:  5'- cGUCuGuACGUGAUgGGCGAcGGCGCGC-Cg -3'
miRNA:   3'- -CAG-C-UGCGCUGgCCGCU-CCGCGCGuG- -5'
24062 5' -62.3 NC_005262.1 + 58446 0.71 0.186807
Target:  5'- --gGACGCc-CCGGC-AGGCGUGCGCg -3'
miRNA:   3'- cagCUGCGcuGGCCGcUCCGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 17151 0.71 0.186807
Target:  5'- cGUCGcaauCGagaaGGCCGGCaAGGcCGCGCGCg -3'
miRNA:   3'- -CAGCu---GCg---CUGGCCGcUCC-GCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 43287 0.71 0.186807
Target:  5'- gGUCGuCGCGagcGCCGcGcCGAuGGUGCGCGCg -3'
miRNA:   3'- -CAGCuGCGC---UGGC-C-GCU-CCGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 30918 0.71 0.191604
Target:  5'- -cCGACGUucGACgCGGCGAacgcucGGCGcCGCACg -3'
miRNA:   3'- caGCUGCG--CUG-GCCGCU------CCGC-GCGUG- -5'
24062 5' -62.3 NC_005262.1 + 48766 0.71 0.191604
Target:  5'- gGUCGGCGCGAacaUGGCagcgcAGGaCGUGCGCg -3'
miRNA:   3'- -CAGCUGCGCUg--GCCGc----UCC-GCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 23347 0.71 0.191604
Target:  5'- cUCGACcaCGGCCGGCGuGaaGCGCGCg -3'
miRNA:   3'- cAGCUGc-GCUGGCCGCuCcgCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 17249 0.71 0.191604
Target:  5'- cGUCG-CGgGAgCGGCGGccGGCGcCGCGCu -3'
miRNA:   3'- -CAGCuGCgCUgGCCGCU--CCGC-GCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.