miRNA display CGI


Results 21 - 40 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24062 5' -62.3 NC_005262.1 + 49155 0.66 0.390944
Target:  5'- gGUgGGCGUGcaggccgcAUCGGCcgcagcGGCGCGCACg -3'
miRNA:   3'- -CAgCUGCGC--------UGGCCGcu----CCGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 10976 0.66 0.390944
Target:  5'- uGUCGGCGCG-CCGG-GAacgccGGuCGCGCucGCa -3'
miRNA:   3'- -CAGCUGCGCuGGCCgCU-----CC-GCGCG--UG- -5'
24062 5' -62.3 NC_005262.1 + 44129 0.66 0.390944
Target:  5'- aUCGGCGUucccgcguuccGGCCGGac--GCGCGCGCg -3'
miRNA:   3'- cAGCUGCG-----------CUGGCCgcucCGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 12918 0.66 0.390092
Target:  5'- --gGACGaCGACaaccugcgCGGCGcgcugaaGGGCGUGCGCg -3'
miRNA:   3'- cagCUGC-GCUG--------GCCGC-------UCCGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 7288 0.66 0.388393
Target:  5'- -aCGGCGCGuccagaugcuccucGCUGuaGAGGCGCuucuGCACg -3'
miRNA:   3'- caGCUGCGC--------------UGGCcgCUCCGCG----CGUG- -5'
24062 5' -62.3 NC_005262.1 + 33387 0.66 0.382485
Target:  5'- cGUCGACGCcGCCcagcucaaGGuCGcAGGCGC-CACg -3'
miRNA:   3'- -CAGCUGCGcUGG--------CC-GC-UCCGCGcGUG- -5'
24062 5' -62.3 NC_005262.1 + 30999 0.66 0.382485
Target:  5'- cGUCGaACGCGA-UGGCc-GGCGCGC-Cg -3'
miRNA:   3'- -CAGC-UGCGCUgGCCGcuCCGCGCGuG- -5'
24062 5' -62.3 NC_005262.1 + 55925 0.66 0.382485
Target:  5'- cGUCGAC-CGuCCGGCGAucgagGGCG-GCGg -3'
miRNA:   3'- -CAGCUGcGCuGGCCGCU-----CCGCgCGUg -5'
24062 5' -62.3 NC_005262.1 + 6623 0.66 0.382485
Target:  5'- -gCGACaCGAgCGGCGAGGgGuCGC-Cg -3'
miRNA:   3'- caGCUGcGCUgGCCGCUCCgC-GCGuG- -5'
24062 5' -62.3 NC_005262.1 + 1060 0.66 0.382485
Target:  5'- -gCGGCGCuGACCGccaGCGcgccgaucaGGGUGCGUGCg -3'
miRNA:   3'- caGCUGCG-CUGGC---CGC---------UCCGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 11632 0.66 0.382485
Target:  5'- cUCGGCGUcgaGGCCGGgGuAGuuGCGCGCc -3'
miRNA:   3'- cAGCUGCG---CUGGCCgC-UCcgCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 9365 0.66 0.381645
Target:  5'- gGUCGGCGCGcgcggcggccugcGCCuccGCGAGcuUGCGCACg -3'
miRNA:   3'- -CAGCUGCGC-------------UGGc--CGCUCc-GCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 49322 0.66 0.381645
Target:  5'- --aGGCGCagggcauGACCGaCGAgcaGGCGCGCGCc -3'
miRNA:   3'- cagCUGCG-------CUGGCcGCU---CCGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 15870 0.67 0.374148
Target:  5'- uUCGAUGUcGCCGGCGcucGGCGUcuGCAa -3'
miRNA:   3'- cAGCUGCGcUGGCCGCu--CCGCG--CGUg -5'
24062 5' -62.3 NC_005262.1 + 8946 0.67 0.374148
Target:  5'- aGUUGACGa-GCCGGUc-GGCGCGCuGCg -3'
miRNA:   3'- -CAGCUGCgcUGGCCGcuCCGCGCG-UG- -5'
24062 5' -62.3 NC_005262.1 + 21349 0.67 0.374148
Target:  5'- aUCGAgGCGGCCaaGGCc--GCGCGCAg -3'
miRNA:   3'- cAGCUgCGCUGG--CCGcucCGCGCGUg -5'
24062 5' -62.3 NC_005262.1 + 29146 0.67 0.374148
Target:  5'- aUCGACGaGGCCGaGU--GGCGCGCGa -3'
miRNA:   3'- cAGCUGCgCUGGC-CGcuCCGCGCGUg -5'
24062 5' -62.3 NC_005262.1 + 49360 0.67 0.374148
Target:  5'- cUCGcUGaCGACuCGGCGAcGCGCGCGu -3'
miRNA:   3'- cAGCuGC-GCUG-GCCGCUcCGCGCGUg -5'
24062 5' -62.3 NC_005262.1 + 2040 0.67 0.373321
Target:  5'- cUCGACGgGGCgCGuaGCGAGcaucccagccagcGUGCGCACa -3'
miRNA:   3'- cAGCUGCgCUG-GC--CGCUC-------------CGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 11803 0.67 0.371671
Target:  5'- aUCGAugccgcuguucaguUGCGaACCGgacaguuucgaGCGcAGGCGCGCGCg -3'
miRNA:   3'- cAGCU--------------GCGC-UGGC-----------CGC-UCCGCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.