miRNA display CGI


Results 41 - 60 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24062 5' -62.3 NC_005262.1 + 39581 0.67 0.365936
Target:  5'- aUCGGCGUG-CCGGCGcaGCGuCGCGg -3'
miRNA:   3'- cAGCUGCGCuGGCCGCucCGC-GCGUg -5'
24062 5' -62.3 NC_005262.1 + 57154 0.67 0.365936
Target:  5'- -gCGACGCGAUCGaaGCGccGC-CGCACa -3'
miRNA:   3'- caGCUGCGCUGGC--CGCucCGcGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 182 0.67 0.365936
Target:  5'- uGUCGuacagcaGCGuGCCGGUGAcgauccgcaGcGCGCGCACg -3'
miRNA:   3'- -CAGCug-----CGC-UGGCCGCU---------C-CGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 57492 0.67 0.365936
Target:  5'- --aGAgGCGGCCGGCGAgcgcaagaaGGCG-GCGa -3'
miRNA:   3'- cagCUgCGCUGGCCGCU---------CCGCgCGUg -5'
24062 5' -62.3 NC_005262.1 + 36292 0.67 0.361068
Target:  5'- -gCGACGCGAacaccucggucgacuUCGGUGGGGgGCcgguGCGCu -3'
miRNA:   3'- caGCUGCGCU---------------GGCCGCUCCgCG----CGUG- -5'
24062 5' -62.3 NC_005262.1 + 15765 0.67 0.357849
Target:  5'- --gGGCGCGGCCGGCuGcuGCGUGguCu -3'
miRNA:   3'- cagCUGCGCUGGCCG-CucCGCGCguG- -5'
24062 5' -62.3 NC_005262.1 + 52707 0.67 0.357849
Target:  5'- -cCGGC-CGacGCCGGaCGAGGC-CGCGCu -3'
miRNA:   3'- caGCUGcGC--UGGCC-GCUCCGcGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 24828 0.67 0.357849
Target:  5'- -gCGAuCGCGGCCGGCGccGUGCcgaucacccuGCGCc -3'
miRNA:   3'- caGCU-GCGCUGGCCGCucCGCG----------CGUG- -5'
24062 5' -62.3 NC_005262.1 + 39925 0.67 0.357849
Target:  5'- gGUgGACGaaCGACCGGaCG-GGCG-GCACc -3'
miRNA:   3'- -CAgCUGC--GCUGGCC-GCuCCGCgCGUG- -5'
24062 5' -62.3 NC_005262.1 + 49938 0.67 0.357849
Target:  5'- -aCGACGaCGGCCGGUGcuGCGC-CAUc -3'
miRNA:   3'- caGCUGC-GCUGGCCGCucCGCGcGUG- -5'
24062 5' -62.3 NC_005262.1 + 6879 0.67 0.357849
Target:  5'- cUCGAgCGCGgccuugaucucGCCGGCGAGcGUGUugucGCGCu -3'
miRNA:   3'- cAGCU-GCGC-----------UGGCCGCUC-CGCG----CGUG- -5'
24062 5' -62.3 NC_005262.1 + 58805 0.67 0.357849
Target:  5'- -aCGACGUGAUCGGCGccGUGaagGCAUg -3'
miRNA:   3'- caGCUGCGCUGGCCGCucCGCg--CGUG- -5'
24062 5' -62.3 NC_005262.1 + 16333 0.67 0.357849
Target:  5'- aUCGcCGCGAuccuCUGGCucGGCGCGCu- -3'
miRNA:   3'- cAGCuGCGCU----GGCCGcuCCGCGCGug -5'
24062 5' -62.3 NC_005262.1 + 27381 0.67 0.357047
Target:  5'- cGUCGGCGCcuccgcgaacgugGACuuCGGCGAcgGGCGaaCGCGCu -3'
miRNA:   3'- -CAGCUGCG-------------CUG--GCCGCU--CCGC--GCGUG- -5'
24062 5' -62.3 NC_005262.1 + 51527 0.67 0.357047
Target:  5'- -aCGACcgugcgcaacacgGCGACCGGCucgcguaccacGuGGuCGCGCGCg -3'
miRNA:   3'- caGCUG-------------CGCUGGCCG-----------CuCC-GCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 467 0.67 0.349887
Target:  5'- --gGGCGuUGACCucGGCGAcgcGGCGCGCGu -3'
miRNA:   3'- cagCUGC-GCUGG--CCGCU---CCGCGCGUg -5'
24062 5' -62.3 NC_005262.1 + 37874 0.67 0.342053
Target:  5'- aUCGGCGCGcccggaggcACgGGCGGgaaguaugguGGCGCGgGCu -3'
miRNA:   3'- cAGCUGCGC---------UGgCCGCU----------CCGCGCgUG- -5'
24062 5' -62.3 NC_005262.1 + 36523 0.67 0.342053
Target:  5'- cGUUGACGguCGGCgCGGCGAcugggauuaucGG-GCGCACg -3'
miRNA:   3'- -CAGCUGC--GCUG-GCCGCU-----------CCgCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 30860 0.67 0.342053
Target:  5'- gGUCGGaGCGaucgugaaggcGCUGGCGAGcgucGCGCGUGCg -3'
miRNA:   3'- -CAGCUgCGC-----------UGGCCGCUC----CGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 15876 0.67 0.334346
Target:  5'- cUCGACGCGA-UGGCGcugauccgccGCGUGCGCg -3'
miRNA:   3'- cAGCUGCGCUgGCCGCuc--------CGCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.