miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24062 5' -62.3 NC_005262.1 + 182 0.67 0.365936
Target:  5'- uGUCGuacagcaGCGuGCCGGUGAcgauccgcaGcGCGCGCACg -3'
miRNA:   3'- -CAGCug-----CGC-UGGCCGCU---------C-CGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 467 0.67 0.349887
Target:  5'- --gGGCGuUGACCucGGCGAcgcGGCGCGCGu -3'
miRNA:   3'- cagCUGC-GCUGG--CCGCU---CCGCGCGUg -5'
24062 5' -62.3 NC_005262.1 + 906 0.69 0.277298
Target:  5'- cGUCGGCGCG-CUGGCGGgugauGGUGuCGCcCa -3'
miRNA:   3'- -CAGCUGCGCuGGCCGCU-----CCGC-GCGuG- -5'
24062 5' -62.3 NC_005262.1 + 985 0.7 0.23981
Target:  5'- --aGugGCGACCuGCGGGGCG-GgGCg -3'
miRNA:   3'- cagCugCGCUGGcCGCUCCGCgCgUG- -5'
24062 5' -62.3 NC_005262.1 + 1060 0.66 0.382485
Target:  5'- -gCGGCGCuGACCGccaGCGcgccgaucaGGGUGCGUGCg -3'
miRNA:   3'- caGCUGCG-CUGGC---CGC---------UCCGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 1694 0.68 0.311994
Target:  5'- -gCGACGCGGuuGccGCGGcGGCGaCGCAUg -3'
miRNA:   3'- caGCUGCGCUggC--CGCU-CCGC-GCGUG- -5'
24062 5' -62.3 NC_005262.1 + 2040 0.67 0.373321
Target:  5'- cUCGACGgGGCgCGuaGCGAGcaucccagccagcGUGCGCACa -3'
miRNA:   3'- cAGCUGCgCUG-GC--CGCUC-------------CGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 4813 0.67 0.331299
Target:  5'- -aCGGCGCGggaggcgugaggccGCCGGCGGccGGCugguucgacugcuGCGCGCc -3'
miRNA:   3'- caGCUGCGC--------------UGGCCGCU--CCG-------------CGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 5080 0.72 0.173045
Target:  5'- -gCGGCgcguGCGACCGGCucGGcGGUGCGCGCc -3'
miRNA:   3'- caGCUG----CGCUGGCCG--CU-CCGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 5157 0.77 0.071961
Target:  5'- cUCGGCGCGcugaucggugacgGCCGGCGucgcGGGCGCGgGCg -3'
miRNA:   3'- cAGCUGCGC-------------UGGCCGC----UCCGCGCgUG- -5'
24062 5' -62.3 NC_005262.1 + 5204 0.68 0.326767
Target:  5'- -cCGGCGCGACCGa--GGGCGUauccuGCACg -3'
miRNA:   3'- caGCUGCGCUGGCcgcUCCGCG-----CGUG- -5'
24062 5' -62.3 NC_005262.1 + 6092 0.66 0.411737
Target:  5'- cGUCGugGCGGCCuaccgaaagcaccuuGccGCGcccGGCGCGCGa -3'
miRNA:   3'- -CAGCugCGCUGG---------------C--CGCu--CCGCGCGUg -5'
24062 5' -62.3 NC_005262.1 + 6623 0.66 0.382485
Target:  5'- -gCGACaCGAgCGGCGAGGgGuCGC-Cg -3'
miRNA:   3'- caGCUGcGCUgGCCGCUCCgC-GCGuG- -5'
24062 5' -62.3 NC_005262.1 + 6879 0.67 0.357849
Target:  5'- cUCGAgCGCGgccuugaucucGCCGGCGAGcGUGUugucGCGCu -3'
miRNA:   3'- cAGCU-GCGC-----------UGGCCGCUC-CGCG----CGUG- -5'
24062 5' -62.3 NC_005262.1 + 7288 0.66 0.388393
Target:  5'- -aCGGCGCGuccagaugcuccucGCUGuaGAGGCGCuucuGCACg -3'
miRNA:   3'- caGCUGCGC--------------UGGCcgCUCCGCG----CGUG- -5'
24062 5' -62.3 NC_005262.1 + 7642 0.68 0.311994
Target:  5'- uGUCGACGCcGgCGGCGAcGGCuaucuccgcgaGCgGCACg -3'
miRNA:   3'- -CAGCUGCGcUgGCCGCU-CCG-----------CG-CGUG- -5'
24062 5' -62.3 NC_005262.1 + 8132 0.68 0.290794
Target:  5'- aUCGuguuCGUGACCGGCGugccggacgcGGCcacgaGCGCGCg -3'
miRNA:   3'- cAGCu---GCGCUGGCCGCu---------CCG-----CGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 8946 0.67 0.374148
Target:  5'- aGUUGACGa-GCCGGUc-GGCGCGCuGCg -3'
miRNA:   3'- -CAGCUGCgcUGGCCGcuCCGCGCG-UG- -5'
24062 5' -62.3 NC_005262.1 + 9365 0.66 0.381645
Target:  5'- gGUCGGCGCGcgcggcggccugcGCCuccGCGAGcuUGCGCACg -3'
miRNA:   3'- -CAGCUGCGC-------------UGGc--CGCUCc-GCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 9482 0.69 0.26367
Target:  5'- cGUCGAUGaCGucCUGGCggcucauguucgaGAGGCGCGcCACg -3'
miRNA:   3'- -CAGCUGC-GCu-GGCCG-------------CUCCGCGC-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.