miRNA display CGI


Results 21 - 40 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24062 5' -62.3 NC_005262.1 + 10095 0.72 0.16438
Target:  5'- uUCGACGCGGCCGG-GuucuGCGCGCcCg -3'
miRNA:   3'- cAGCUGCGCUGGCCgCuc--CGCGCGuG- -5'
24062 5' -62.3 NC_005262.1 + 10455 0.77 0.070222
Target:  5'- uUCG-CGCGGUCGGCGAgguagcGGCGCGCGCg -3'
miRNA:   3'- cAGCuGCGCUGGCCGCU------CCGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 10550 0.79 0.053431
Target:  5'- -cCGACGCGACCGGCc--GCGCGCAg -3'
miRNA:   3'- caGCUGCGCUGGCCGcucCGCGCGUg -5'
24062 5' -62.3 NC_005262.1 + 10763 0.68 0.297733
Target:  5'- gGUUGugGUGAuCCGcccGCGccGGGCGCGCGg -3'
miRNA:   3'- -CAGCugCGCU-GGC---CGC--UCCGCGCGUg -5'
24062 5' -62.3 NC_005262.1 + 10976 0.66 0.390944
Target:  5'- uGUCGGCGCG-CCGG-GAacgccGGuCGCGCucGCa -3'
miRNA:   3'- -CAGCUGCGCuGGCCgCU-----CC-GCGCG--UG- -5'
24062 5' -62.3 NC_005262.1 + 11632 0.66 0.382485
Target:  5'- cUCGGCGUcgaGGCCGGgGuAGuuGCGCGCc -3'
miRNA:   3'- cAGCUGCG---CUGGCCgC-UCcgCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 11645 0.74 0.120153
Target:  5'- cUCGGCgGCG-CCGGCGucGCGCuGCACg -3'
miRNA:   3'- cAGCUG-CGCuGGCCGCucCGCG-CGUG- -5'
24062 5' -62.3 NC_005262.1 + 11803 0.67 0.371671
Target:  5'- aUCGAugccgcuguucaguUGCGaACCGgacaguuucgaGCGcAGGCGCGCGCg -3'
miRNA:   3'- cAGCU--------------GCGC-UGGC-----------CGC-UCCGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 12273 0.72 0.156107
Target:  5'- uGUCGAuCGCGGCCGGCGAGcCGaGCu- -3'
miRNA:   3'- -CAGCU-GCGCUGGCCGCUCcGCgCGug -5'
24062 5' -62.3 NC_005262.1 + 12413 0.66 0.408224
Target:  5'- gGUCaGGCGCGgccuugGCCGGCGucGCGgacgGCGCg -3'
miRNA:   3'- -CAG-CUGCGC------UGGCCGCucCGCg---CGUG- -5'
24062 5' -62.3 NC_005262.1 + 12574 0.76 0.092027
Target:  5'- cGUCGAgcugcugcUGCcGCCGGCGAGGCGuCGCGg -3'
miRNA:   3'- -CAGCU--------GCGcUGGCCGCUCCGC-GCGUg -5'
24062 5' -62.3 NC_005262.1 + 12808 0.67 0.334346
Target:  5'- -gCGGCGCGcaGCCGGCGcgugaagaAGGaGCGCGg -3'
miRNA:   3'- caGCUGCGC--UGGCCGC--------UCCgCGCGUg -5'
24062 5' -62.3 NC_005262.1 + 12918 0.66 0.390092
Target:  5'- --gGACGaCGACaaccugcgCGGCGcgcugaaGGGCGUGCGCg -3'
miRNA:   3'- cagCUGC-GCUG--------GCCGC-------UCCGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 13523 0.72 0.156107
Target:  5'- --gGGCuCGGCCGGCGcGGGCGCGCc- -3'
miRNA:   3'- cagCUGcGCUGGCCGC-UCCGCGCGug -5'
24062 5' -62.3 NC_005262.1 + 13801 0.74 0.113952
Target:  5'- -cCGGCGCGGCuucauCGGCGGGaGCGgGCGCc -3'
miRNA:   3'- caGCUGCGCUG-----GCCGCUC-CGCgCGUG- -5'
24062 5' -62.3 NC_005262.1 + 14027 0.7 0.211887
Target:  5'- -gCGGCaGCGGCCGGagccucGGGCGCGgGCg -3'
miRNA:   3'- caGCUG-CGCUGGCCgc----UCCGCGCgUG- -5'
24062 5' -62.3 NC_005262.1 + 15138 0.7 0.222705
Target:  5'- -aCGcauCGCGGCCGGCGucgagucGGCGCGgAUg -3'
miRNA:   3'- caGCu--GCGCUGGCCGCu------CCGCGCgUG- -5'
24062 5' -62.3 NC_005262.1 + 15399 0.68 0.326767
Target:  5'- uUCGcCGCGcuUCaGCGAGGCGCGguCg -3'
miRNA:   3'- cAGCuGCGCu-GGcCGCUCCGCGCguG- -5'
24062 5' -62.3 NC_005262.1 + 15765 0.67 0.357849
Target:  5'- --gGGCGCGGCCGGCuGcuGCGUGguCu -3'
miRNA:   3'- cagCUGCGCUGGCCG-CucCGCGCguG- -5'
24062 5' -62.3 NC_005262.1 + 15870 0.67 0.374148
Target:  5'- uUCGAUGUcGCCGGCGcucGGCGUcuGCAa -3'
miRNA:   3'- cAGCUGCGcUGGCCGCu--CCGCG--CGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.