miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24062 5' -62.3 NC_005262.1 + 63685 0.68 0.311994
Target:  5'- gGUCGGuCGcCGGCCGGUGAcaUGCGCAg -3'
miRNA:   3'- -CAGCU-GC-GCUGGCCGCUccGCGCGUg -5'
24062 5' -62.3 NC_005262.1 + 62735 0.68 0.297733
Target:  5'- aUCGGCGCG-CUGGCGGucaGCGcCGCAg -3'
miRNA:   3'- cAGCUGCGCuGGCCGCUc--CGC-GCGUg -5'
24062 5' -62.3 NC_005262.1 + 61598 0.68 0.326767
Target:  5'- --aGACGCucucGACCGaGCaGAaGCGCGCGCg -3'
miRNA:   3'- cagCUGCG----CUGGC-CG-CUcCGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 61288 0.66 0.408224
Target:  5'- aUCGGCGCGGCCagccucGCGGGGUcggauauggGCaGCAUg -3'
miRNA:   3'- cAGCUGCGCUGGc-----CGCUCCG---------CG-CGUG- -5'
24062 5' -62.3 NC_005262.1 + 61159 0.68 0.290107
Target:  5'- aUCG-CgGCGGCgGGCGAgcugacgGGCGCGCGg -3'
miRNA:   3'- cAGCuG-CGCUGgCCGCU-------CCGCGCGUg -5'
24062 5' -62.3 NC_005262.1 + 60848 0.74 0.113952
Target:  5'- aUCGGCGUGGCgaUGGcCGAGGCaauGCGCGCg -3'
miRNA:   3'- cAGCUGCGCUG--GCC-GCUCCG---CGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 59128 0.7 0.228288
Target:  5'- -cCGAgGCGaACCGGCcGGGCcgcgucgccGCGCGCa -3'
miRNA:   3'- caGCUgCGC-UGGCCGcUCCG---------CGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 58902 0.72 0.177529
Target:  5'- -gCGcuGCGCGaucagGCCGGCGGcccgaccgauGGCGCGCGCu -3'
miRNA:   3'- caGC--UGCGC-----UGGCCGCU----------CCGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 58846 0.66 0.425973
Target:  5'- uUCGgcACGCaGAUCGGCGAcgucacgccGGCGCagcccGCGCg -3'
miRNA:   3'- cAGC--UGCG-CUGGCCGCU---------CCGCG-----CGUG- -5'
24062 5' -62.3 NC_005262.1 + 58805 0.67 0.357849
Target:  5'- -aCGACGUGAUCGGCGccGUGaagGCAUg -3'
miRNA:   3'- caGCUGCGCUGGCCGCucCGCg--CGUG- -5'
24062 5' -62.3 NC_005262.1 + 58637 0.7 0.211887
Target:  5'- cUCGGCaGuCGAgCGGCcGGGCGCGCGa -3'
miRNA:   3'- cAGCUG-C-GCUgGCCGcUCCGCGCGUg -5'
24062 5' -62.3 NC_005262.1 + 58446 0.71 0.186807
Target:  5'- --gGACGCc-CCGGC-AGGCGUGCGCg -3'
miRNA:   3'- cagCUGCGcuGGCCGcUCCGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 57610 0.66 0.408224
Target:  5'- uUCcGCGCcuauGACC-GCGAGGCGCaggaGCGCg -3'
miRNA:   3'- cAGcUGCG----CUGGcCGCUCCGCG----CGUG- -5'
24062 5' -62.3 NC_005262.1 + 57492 0.67 0.365936
Target:  5'- --aGAgGCGGCCGGCGAgcgcaagaaGGCG-GCGa -3'
miRNA:   3'- cagCUgCGCUGGCCGCU---------CCGCgCGUg -5'
24062 5' -62.3 NC_005262.1 + 57277 0.72 0.177529
Target:  5'- -gCGAgCGUGA-CGGCGAGGUcgGCGCGCu -3'
miRNA:   3'- caGCU-GCGCUgGCCGCUCCG--CGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 57154 0.67 0.365936
Target:  5'- -gCGACGCGAUCGaaGCGccGC-CGCACa -3'
miRNA:   3'- caGCUGCGCUGGC--CGCucCGcGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 57030 0.68 0.297733
Target:  5'- aUCGGCaucGUGcCCGGCcacgagcacaacGAGGCGCGCGa -3'
miRNA:   3'- cAGCUG---CGCuGGCCG------------CUCCGCGCGUg -5'
24062 5' -62.3 NC_005262.1 + 56893 0.69 0.257998
Target:  5'- gGUCGAgCGCGacaacacgcucGCCGGCGAgaucaaGGC-CGCGCu -3'
miRNA:   3'- -CAGCU-GCGC-----------UGGCCGCU------CCGcGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 55925 0.66 0.382485
Target:  5'- cGUCGAC-CGuCCGGCGAucgagGGCG-GCGg -3'
miRNA:   3'- -CAGCUGcGCuGGCCGCU-----CCGCgCGUg -5'
24062 5' -62.3 NC_005262.1 + 55570 0.69 0.264307
Target:  5'- aUCGACcCGGCCGGCuc-GCaGCGCGCg -3'
miRNA:   3'- cAGCUGcGCUGGCCGcucCG-CGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.