miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24062 5' -62.3 NC_005262.1 + 23347 0.71 0.191604
Target:  5'- cUCGACcaCGGCCGGCGuGaaGCGCGCg -3'
miRNA:   3'- cAGCUGc-GCUGGCCGCuCcgCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 12273 0.72 0.156107
Target:  5'- uGUCGAuCGCGGCCGGCGAGcCGaGCu- -3'
miRNA:   3'- -CAGCU-GCGCUGGCCGCUCcGCgCGug -5'
24062 5' -62.3 NC_005262.1 + 24328 0.72 0.156107
Target:  5'- gGUCGGCGCGAUCGacaugcggcucuGCGucGGCGCGCc- -3'
miRNA:   3'- -CAGCUGCGCUGGC------------CGCu-CCGCGCGug -5'
24062 5' -62.3 NC_005262.1 + 5080 0.72 0.173045
Target:  5'- -gCGGCgcguGCGACCGGCucGGcGGUGCGCGCc -3'
miRNA:   3'- caGCUG----CGCUGGCCG--CU-CCGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 35357 0.72 0.173045
Target:  5'- -aCGACGCaccGACCGGCGGaaauaugcuGGCGCaCGCg -3'
miRNA:   3'- caGCUGCG---CUGGCCGCU---------CCGCGcGUG- -5'
24062 5' -62.3 NC_005262.1 + 58902 0.72 0.177529
Target:  5'- -gCGcuGCGCGaucagGCCGGCGGcccgaccgauGGCGCGCGCu -3'
miRNA:   3'- caGC--UGCGC-----UGGCCGCU----------CCGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 42177 0.71 0.186807
Target:  5'- cGUCuGuACGUGAUgGGCGAcGGCGCGC-Cg -3'
miRNA:   3'- -CAG-C-UGCGCUGgCCGCU-CCGCGCGuG- -5'
24062 5' -62.3 NC_005262.1 + 58446 0.71 0.186807
Target:  5'- --gGACGCc-CCGGC-AGGCGUGCGCg -3'
miRNA:   3'- cagCUGCGcuGGCCGcUCCGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 17151 0.71 0.186807
Target:  5'- cGUCGcaauCGagaaGGCCGGCaAGGcCGCGCGCg -3'
miRNA:   3'- -CAGCu---GCg---CUGGCCGcUCC-GCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 36722 0.73 0.144402
Target:  5'- cGUUGugGgGGCUGGCGccGCGgGCGCa -3'
miRNA:   3'- -CAGCugCgCUGGCCGCucCGCgCGUG- -5'
24062 5' -62.3 NC_005262.1 + 46175 0.74 0.120153
Target:  5'- -cCGACGCGA-CGGcCGAGGCGaucaCGCACu -3'
miRNA:   3'- caGCUGCGCUgGCC-GCUCCGC----GCGUG- -5'
24062 5' -62.3 NC_005262.1 + 11645 0.74 0.120153
Target:  5'- cUCGGCgGCG-CCGGCGucGCGCuGCACg -3'
miRNA:   3'- cAGCUG-CGCuGGCCGCucCGCG-CGUG- -5'
24062 5' -62.3 NC_005262.1 + 24382 0.81 0.039462
Target:  5'- uGUCGACGCcaaACCGGC--GGCGCGCACg -3'
miRNA:   3'- -CAGCUGCGc--UGGCCGcuCCGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 10550 0.79 0.053431
Target:  5'- -cCGACGCGACCGGCc--GCGCGCAg -3'
miRNA:   3'- caGCUGCGCUGGCCGcucCGCGCGUg -5'
24062 5' -62.3 NC_005262.1 + 5157 0.77 0.071961
Target:  5'- cUCGGCGCGcugaucggugacgGCCGGCGucgcGGGCGCGgGCg -3'
miRNA:   3'- cAGCUGCGC-------------UGGCCGC----UCCGCGCgUG- -5'
24062 5' -62.3 NC_005262.1 + 53835 0.76 0.092027
Target:  5'- -cUGACGC-ACCGGCGcGGCGCGgACg -3'
miRNA:   3'- caGCUGCGcUGGCCGCuCCGCGCgUG- -5'
24062 5' -62.3 NC_005262.1 + 12574 0.76 0.092027
Target:  5'- cGUCGAgcugcugcUGCcGCCGGCGAGGCGuCGCGg -3'
miRNA:   3'- -CAGCU--------GCGcUGGCCGCUCCGC-GCGUg -5'
24062 5' -62.3 NC_005262.1 + 36115 0.75 0.10521
Target:  5'- uUCGacgcuGCGCGAUaCGGCGAGGCGaGCACc -3'
miRNA:   3'- cAGC-----UGCGCUG-GCCGCUCCGCgCGUG- -5'
24062 5' -62.3 NC_005262.1 + 60848 0.74 0.113952
Target:  5'- aUCGGCGUGGCgaUGGcCGAGGCaauGCGCGCg -3'
miRNA:   3'- cAGCUGCGCUG--GCC-GCUCCG---CGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 17091 0.74 0.120153
Target:  5'- cGUCGACGCGGCgGGCcgcGAGGagguccacCGCGCGg -3'
miRNA:   3'- -CAGCUGCGCUGgCCG---CUCC--------GCGCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.