miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24062 5' -62.3 NC_005262.1 + 20241 0.66 0.425973
Target:  5'- cGUCuGCGCGAggaauCCGGaCGgcAGGCG-GCACa -3'
miRNA:   3'- -CAGcUGCGCU-----GGCC-GC--UCCGCgCGUG- -5'
24062 5' -62.3 NC_005262.1 + 11803 0.67 0.371671
Target:  5'- aUCGAugccgcuguucaguUGCGaACCGgacaguuucgaGCGcAGGCGCGCGCg -3'
miRNA:   3'- cAGCU--------------GCGC-UGGC-----------CGC-UCCGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 57492 0.67 0.365936
Target:  5'- --aGAgGCGGCCGGCGAgcgcaagaaGGCG-GCGa -3'
miRNA:   3'- cagCUgCGCUGGCCGCU---------CCGCgCGUg -5'
24062 5' -62.3 NC_005262.1 + 46304 0.79 0.054917
Target:  5'- aUCGACGCG-UCGcGCGcGGCGCGCGCu -3'
miRNA:   3'- cAGCUGCGCuGGC-CGCuCCGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 57610 0.66 0.408224
Target:  5'- uUCcGCGCcuauGACC-GCGAGGCGCaggaGCGCg -3'
miRNA:   3'- cAGcUGCG----CUGGcCGCUCCGCG----CGUG- -5'
24062 5' -62.3 NC_005262.1 + 21810 0.66 0.408224
Target:  5'- uUCGuCGCGuucuGCgCGGCGgugucaggcaacAGGCGCgGCACa -3'
miRNA:   3'- cAGCuGCGC----UG-GCCGC------------UCCGCG-CGUG- -5'
24062 5' -62.3 NC_005262.1 + 12413 0.66 0.408224
Target:  5'- gGUCaGGCGCGgccuugGCCGGCGucGCGgacgGCGCg -3'
miRNA:   3'- -CAG-CUGCGC------UGGCCGCucCGCg---CGUG- -5'
24062 5' -62.3 NC_005262.1 + 18034 0.66 0.399524
Target:  5'- -gCGAUGcCGAUCGGCGucGCGUuCGCg -3'
miRNA:   3'- caGCUGC-GCUGGCCGCucCGCGcGUG- -5'
24062 5' -62.3 NC_005262.1 + 1060 0.66 0.382485
Target:  5'- -gCGGCGCuGACCGccaGCGcgccgaucaGGGUGCGUGCg -3'
miRNA:   3'- caGCUGCG-CUGGC---CGC---------UCCGCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 8946 0.67 0.374148
Target:  5'- aGUUGACGa-GCCGGUc-GGCGCGCuGCg -3'
miRNA:   3'- -CAGCUGCgcUGGCCGcuCCGCGCG-UG- -5'
24062 5' -62.3 NC_005262.1 + 6623 0.66 0.382485
Target:  5'- -gCGACaCGAgCGGCGAGGgGuCGC-Cg -3'
miRNA:   3'- caGCUGcGCUgGCCGCUCCgC-GCGuG- -5'
24062 5' -62.3 NC_005262.1 + 30999 0.66 0.382485
Target:  5'- cGUCGaACGCGA-UGGCc-GGCGCGC-Cg -3'
miRNA:   3'- -CAGC-UGCGCUgGCCGcuCCGCGCGuG- -5'
24062 5' -62.3 NC_005262.1 + 48710 0.66 0.425973
Target:  5'- uUCGAguUGCcuCCGGCccGAGGCGgGUACa -3'
miRNA:   3'- cAGCU--GCGcuGGCCG--CUCCGCgCGUG- -5'
24062 5' -62.3 NC_005262.1 + 9365 0.66 0.381645
Target:  5'- gGUCGGCGCGcgcggcggccugcGCCuccGCGAGcuUGCGCACg -3'
miRNA:   3'- -CAGCUGCGC-------------UGGc--CGCUCc-GCGCGUG- -5'
24062 5' -62.3 NC_005262.1 + 21369 0.66 0.417041
Target:  5'- uUCGugauguUGCGGCCGGCu-GGCGC-CGCc -3'
miRNA:   3'- cAGCu-----GCGCUGGCCGcuCCGCGcGUG- -5'
24062 5' -62.3 NC_005262.1 + 7288 0.66 0.388393
Target:  5'- -aCGGCGCGuccagaugcuccucGCUGuaGAGGCGCuucuGCACg -3'
miRNA:   3'- caGCUGCGC--------------UGGCcgCUCCGCG----CGUG- -5'
24062 5' -62.3 NC_005262.1 + 15870 0.67 0.374148
Target:  5'- uUCGAUGUcGCCGGCGcucGGCGUcuGCAa -3'
miRNA:   3'- cAGCUGCGcUGGCCGCu--CCGCG--CGUg -5'
24062 5' -62.3 NC_005262.1 + 39581 0.67 0.365936
Target:  5'- aUCGGCGUG-CCGGCGcaGCGuCGCGg -3'
miRNA:   3'- cAGCUGCGCuGGCCGCucCGC-GCGUg -5'
24062 5' -62.3 NC_005262.1 + 6092 0.66 0.411737
Target:  5'- cGUCGugGCGGCCuaccgaaagcaccuuGccGCGcccGGCGCGCGa -3'
miRNA:   3'- -CAGCugCGCUGG---------------C--CGCu--CCGCGCGUg -5'
24062 5' -62.3 NC_005262.1 + 47390 0.66 0.408224
Target:  5'- -gCGGCgcagaaucccgGCGGCCGGcCGGGGCGgGUuCa -3'
miRNA:   3'- caGCUG-----------CGCUGGCC-GCUCCGCgCGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.