miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24063 3' -52 NC_005262.1 + 36731 0.65 0.918857
Target:  5'- --cCGAGCUCGCGcacgaacgcguagcGCGuGAggUCGAUGg -3'
miRNA:   3'- cuuGCUCGAGCGU--------------CGC-UUuuGGCUGC- -5'
24063 3' -52 NC_005262.1 + 21265 0.66 0.914477
Target:  5'- cGAGCGGGCUU-CAGCGccAAGACUG-CGc -3'
miRNA:   3'- -CUUGCUCGAGcGUCGC--UUUUGGCuGC- -5'
24063 3' -52 NC_005262.1 + 17558 0.66 0.914477
Target:  5'- aGGCGgcAGC-CGCGGCGGcgcgcgAAGCCGAgGa -3'
miRNA:   3'- cUUGC--UCGaGCGUCGCU------UUUGGCUgC- -5'
24063 3' -52 NC_005262.1 + 23366 0.66 0.914477
Target:  5'- aAGCGcGCg-GCGGCGAAGGCCcGCa -3'
miRNA:   3'- cUUGCuCGagCGUCGCUUUUGGcUGc -5'
24063 3' -52 NC_005262.1 + 54477 0.66 0.914477
Target:  5'- aGGCGcuGCUCGCGGUGc-AGCCGAa- -3'
miRNA:   3'- cUUGCu-CGAGCGUCGCuuUUGGCUgc -5'
24063 3' -52 NC_005262.1 + 62939 0.66 0.914477
Target:  5'- aGGACGAGCgcgauuugCGC-GCGucgcuuccGGCCGACa -3'
miRNA:   3'- -CUUGCUCGa-------GCGuCGCuu------UUGGCUGc -5'
24063 3' -52 NC_005262.1 + 21580 0.66 0.914477
Target:  5'- cGAGCGGGUaCGUcGUGcc-GCCGACGa -3'
miRNA:   3'- -CUUGCUCGaGCGuCGCuuuUGGCUGC- -5'
24063 3' -52 NC_005262.1 + 63739 0.66 0.914477
Target:  5'- -cGCGAGC-CGCGGCcucc-CCGGCa -3'
miRNA:   3'- cuUGCUCGaGCGUCGcuuuuGGCUGc -5'
24063 3' -52 NC_005262.1 + 52128 0.66 0.913841
Target:  5'- -cGCGaAGCUCugccggccagcguGCAGCGcGAcGCCGGCGc -3'
miRNA:   3'- cuUGC-UCGAG-------------CGUCGC-UUuUGGCUGC- -5'
24063 3' -52 NC_005262.1 + 28714 0.66 0.907983
Target:  5'- cGACGAGUUcCGCcGCGA-GGCCGcGCGc -3'
miRNA:   3'- cUUGCUCGA-GCGuCGCUuUUGGC-UGC- -5'
24063 3' -52 NC_005262.1 + 1163 0.66 0.907983
Target:  5'- -cGCGGGCUUGCcauccugcGCGGAAGCCcaguGCGa -3'
miRNA:   3'- cuUGCUCGAGCGu-------CGCUUUUGGc---UGC- -5'
24063 3' -52 NC_005262.1 + 57812 0.66 0.907983
Target:  5'- cAACGAGCa-GCAGCcGGccgagcaaAAGCCGACc -3'
miRNA:   3'- cUUGCUCGagCGUCG-CU--------UUUGGCUGc -5'
24063 3' -52 NC_005262.1 + 896 0.66 0.907983
Target:  5'- -cGCGccAGCUCGuCGGCGc--GCUGGCGg -3'
miRNA:   3'- cuUGC--UCGAGC-GUCGCuuuUGGCUGC- -5'
24063 3' -52 NC_005262.1 + 13535 0.66 0.907983
Target:  5'- -cGCGGGCgcgcccucgUUGCGGCGGucgaucucGGCCGACa -3'
miRNA:   3'- cuUGCUCG---------AGCGUCGCUu-------UUGGCUGc -5'
24063 3' -52 NC_005262.1 + 48949 0.66 0.907983
Target:  5'- cGAACGAGCUCGaccguaauCAGCuuucuAUCGGCa -3'
miRNA:   3'- -CUUGCUCGAGC--------GUCGcuuu-UGGCUGc -5'
24063 3' -52 NC_005262.1 + 50366 0.66 0.907318
Target:  5'- -cGCGAGCggCGCauucgucgaccguGGCGAcgcGAACCGcGCGg -3'
miRNA:   3'- cuUGCUCGa-GCG-------------UCGCU---UUUGGC-UGC- -5'
24063 3' -52 NC_005262.1 + 29111 0.66 0.90121
Target:  5'- aGAACGAcaucacgCGCA-CGAAGGCCGACu -3'
miRNA:   3'- -CUUGCUcga----GCGUcGCUUUUGGCUGc -5'
24063 3' -52 NC_005262.1 + 6454 0.66 0.90121
Target:  5'- --uCG-GCUC-CGGCGAGAcGCCGGCa -3'
miRNA:   3'- cuuGCuCGAGcGUCGCUUU-UGGCUGc -5'
24063 3' -52 NC_005262.1 + 9110 0.66 0.90121
Target:  5'- gGAACGcuGaacCGCAGCGGcuaugaGGACCGGCGc -3'
miRNA:   3'- -CUUGCu-Cga-GCGUCGCU------UUUGGCUGC- -5'
24063 3' -52 NC_005262.1 + 49832 0.66 0.90121
Target:  5'- cGAugGAGCgCGCgaauGGCccgguGCCGGCGg -3'
miRNA:   3'- -CUugCUCGaGCG----UCGcuuu-UGGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.