miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24063 5' -55.9 NC_005262.1 + 22807 0.66 0.711291
Target:  5'- uACGaCCGGCaugugGCUCCG-CGACUacuUCGc -3'
miRNA:   3'- uUGC-GGCCGa----UGAGGCuGCUGA---AGUa -5'
24063 5' -55.9 NC_005262.1 + 39200 0.66 0.711291
Target:  5'- gGAUGCCGGCaACUUCGAucCGGCcagCAa -3'
miRNA:   3'- -UUGCGGCCGaUGAGGCU--GCUGaa-GUa -5'
24063 5' -55.9 NC_005262.1 + 17088 0.66 0.711291
Target:  5'- uGCGCCGGCUugUCCacugcgcgcGCGGCg---- -3'
miRNA:   3'- uUGCGGCCGAugAGGc--------UGCUGaagua -5'
24063 5' -55.9 NC_005262.1 + 15771 0.66 0.68969
Target:  5'- --gGCCGGCUGCUgCGugGuCUggGUg -3'
miRNA:   3'- uugCGGCCGAUGAgGCugCuGAagUA- -5'
24063 5' -55.9 NC_005262.1 + 61223 0.66 0.678801
Target:  5'- -cCGCCGGCUcguCUCCGA-GACgUUCu- -3'
miRNA:   3'- uuGCGGCCGAu--GAGGCUgCUG-AAGua -5'
24063 5' -55.9 NC_005262.1 + 12635 0.66 0.678801
Target:  5'- -cUGCCuGCUGCgcgCuCGGCGACUUCu- -3'
miRNA:   3'- uuGCGGcCGAUGa--G-GCUGCUGAAGua -5'
24063 5' -55.9 NC_005262.1 + 37147 0.66 0.678801
Target:  5'- uGugGCCGGauggGCUCCcuacgaccACGACUUCGa -3'
miRNA:   3'- -UugCGGCCga--UGAGGc-------UGCUGAAGUa -5'
24063 5' -55.9 NC_005262.1 + 40946 0.66 0.667868
Target:  5'- cAACGCUGGCgagAUagCCGACGAgcgcCUUCGc -3'
miRNA:   3'- -UUGCGGCCGa--UGa-GGCUGCU----GAAGUa -5'
24063 5' -55.9 NC_005262.1 + 34066 0.66 0.667868
Target:  5'- gAGCGCCGGCUGCgcuUCgGAUGcuGCUUgGc -3'
miRNA:   3'- -UUGCGGCCGAUG---AGgCUGC--UGAAgUa -5'
24063 5' -55.9 NC_005262.1 + 32931 0.66 0.656901
Target:  5'- -cCGCCGGCgACUCCu-CGGCcgUCAUc -3'
miRNA:   3'- uuGCGGCCGaUGAGGcuGCUGa-AGUA- -5'
24063 5' -55.9 NC_005262.1 + 58487 0.66 0.656901
Target:  5'- -cUGCCGGCcaGCUCCGACcGCcUCGa -3'
miRNA:   3'- uuGCGGCCGa-UGAGGCUGcUGaAGUa -5'
24063 5' -55.9 NC_005262.1 + 51248 0.66 0.656901
Target:  5'- cGCGCCGGCUACgguaagGACGGCa---- -3'
miRNA:   3'- uUGCGGCCGAUGagg---CUGCUGaagua -5'
24063 5' -55.9 NC_005262.1 + 32895 0.66 0.656901
Target:  5'- gAACGUCGGCcaagCCGGCGGCgUCGc -3'
miRNA:   3'- -UUGCGGCCGaugaGGCUGCUGaAGUa -5'
24063 5' -55.9 NC_005262.1 + 30176 0.67 0.645912
Target:  5'- uGCGCCGGCggcuuUUCCuGCGACgUCGg -3'
miRNA:   3'- uUGCGGCCGau---GAGGcUGCUGaAGUa -5'
24063 5' -55.9 NC_005262.1 + 13154 0.67 0.645912
Target:  5'- --aGCCGGUUGCUgcUCGGCGGCgaCAUu -3'
miRNA:   3'- uugCGGCCGAUGA--GGCUGCUGaaGUA- -5'
24063 5' -55.9 NC_005262.1 + 41918 0.67 0.645912
Target:  5'- -uCGuCCGGCUGCg-CGGuCGGCUUCAg -3'
miRNA:   3'- uuGC-GGCCGAUGagGCU-GCUGAAGUa -5'
24063 5' -55.9 NC_005262.1 + 11763 0.68 0.580051
Target:  5'- aGGCGCCGGCgauCgucaugCCGuccaucACGACUUCGg -3'
miRNA:   3'- -UUGCGGCCGau-Ga-----GGC------UGCUGAAGUa -5'
24063 5' -55.9 NC_005262.1 + 32817 0.68 0.569175
Target:  5'- cGACGUCGGCcucaugUCCGGCGACgUCGg -3'
miRNA:   3'- -UUGCGGCCGaug---AGGCUGCUGaAGUa -5'
24063 5' -55.9 NC_005262.1 + 47925 0.68 0.569175
Target:  5'- aGACGCCGaGCg---CCGGCGACaUCGa -3'
miRNA:   3'- -UUGCGGC-CGaugaGGCUGCUGaAGUa -5'
24063 5' -55.9 NC_005262.1 + 56386 0.68 0.547582
Target:  5'- uGACGCCGGaaucCUUCGGCcGCUUCAg -3'
miRNA:   3'- -UUGCGGCCgau-GAGGCUGcUGAAGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.