miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24065 3' -56.3 NC_005262.1 + 30770 0.66 0.723125
Target:  5'- -aUGC-CUACcUCGCCUcgcGCGGCUaaGGAg -3'
miRNA:   3'- ggACGcGAUGuAGCGGA---UGCCGG--UCU- -5'
24065 3' -56.3 NC_005262.1 + 1844 0.66 0.723125
Target:  5'- gCUGCGCaUGCgGUUGCCUGCuuGGUCGc- -3'
miRNA:   3'- gGACGCG-AUG-UAGCGGAUG--CCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 61803 0.66 0.723125
Target:  5'- gCCUGCGCggcGCAU-GCCU-CGGCg--- -3'
miRNA:   3'- -GGACGCGa--UGUAgCGGAuGCCGgucu -5'
24065 3' -56.3 NC_005262.1 + 2655 0.66 0.723125
Target:  5'- gCCUGCGCgg---CGCCggGCGGCg--- -3'
miRNA:   3'- -GGACGCGauguaGCGGa-UGCCGgucu -5'
24065 3' -56.3 NC_005262.1 + 28578 0.66 0.723125
Target:  5'- --cGCGCgacgGCAUgC-CCUACGGCguGAu -3'
miRNA:   3'- ggaCGCGa---UGUA-GcGGAUGCCGguCU- -5'
24065 3' -56.3 NC_005262.1 + 12950 0.66 0.723125
Target:  5'- gCgUGCGCgacgGCAUCGCCgaccgcuCGGCg--- -3'
miRNA:   3'- -GgACGCGa---UGUAGCGGau-----GCCGgucu -5'
24065 3' -56.3 NC_005262.1 + 63327 0.66 0.712627
Target:  5'- --cGCGCcGCGUCGCCga-GGUCAa- -3'
miRNA:   3'- ggaCGCGaUGUAGCGGaugCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 61473 0.66 0.712627
Target:  5'- --aGCGCUagacgACAucuUCGC--GCGGCCGGAa -3'
miRNA:   3'- ggaCGCGA-----UGU---AGCGgaUGCCGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 50170 0.66 0.712627
Target:  5'- gCCUGCGCUaccugacgaaGCAg-GCCaagcucaacgGCGGCUGGAc -3'
miRNA:   3'- -GGACGCGA----------UGUagCGGa---------UGCCGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 51604 0.66 0.712627
Target:  5'- gUUGCGC-ACGgucgucUCGCCguUGCGGCCGa- -3'
miRNA:   3'- gGACGCGaUGU------AGCGG--AUGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 28343 0.66 0.702052
Target:  5'- cCCgUGCGCgUGCAgCGCCUcaAgGGCCGc- -3'
miRNA:   3'- -GG-ACGCG-AUGUaGCGGA--UgCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 59713 0.66 0.702052
Target:  5'- --gGCGCUACGUCGCC---GGCaAGGu -3'
miRNA:   3'- ggaCGCGAUGUAGCGGaugCCGgUCU- -5'
24065 3' -56.3 NC_005262.1 + 49306 0.66 0.680715
Target:  5'- aCUGCGCgccgcCGagGCCgcccuCGGCCAGc -3'
miRNA:   3'- gGACGCGau---GUagCGGau---GCCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 59070 0.66 0.680715
Target:  5'- aCgGCGCgggagGCGUgaggcCGCCgGCGGCCGGc -3'
miRNA:   3'- gGaCGCGa----UGUA-----GCGGaUGCCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 2823 0.66 0.680715
Target:  5'- aCCUGCGCcucgACcUCGUUUGCGcGCUGGc -3'
miRNA:   3'- -GGACGCGa---UGuAGCGGAUGC-CGGUCu -5'
24065 3' -56.3 NC_005262.1 + 8283 0.66 0.680715
Target:  5'- gCUGC-CcGCGUCGCUcgcgagGCGGCCAaGAa -3'
miRNA:   3'- gGACGcGaUGUAGCGGa-----UGCCGGU-CU- -5'
24065 3' -56.3 NC_005262.1 + 50473 0.67 0.6592
Target:  5'- gCC-GCGCgguucGCGUCGCC-ACGGUCGa- -3'
miRNA:   3'- -GGaCGCGa----UGUAGCGGaUGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 51369 0.67 0.6592
Target:  5'- -aUGCGCaGCA--GCCgGCGGCCGGu -3'
miRNA:   3'- ggACGCGaUGUagCGGaUGCCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 55384 0.67 0.6592
Target:  5'- aCUGCGCcGCGUacucgucggacaUGCCgaUGCGGCCGa- -3'
miRNA:   3'- gGACGCGaUGUA------------GCGG--AUGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 16050 0.67 0.6592
Target:  5'- aCC-GcCGCUACcgCGaCUUGCGGCCGa- -3'
miRNA:   3'- -GGaC-GCGAUGuaGC-GGAUGCCGGUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.