miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24065 3' -56.3 NC_005262.1 + 38930 0.69 0.524382
Target:  5'- gCgaGCGCUGCcgUGCCUuccugagcacgcgagACGGUCAGc -3'
miRNA:   3'- -GgaCGCGAUGuaGCGGA---------------UGCCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 29297 0.69 0.489533
Target:  5'- --aGCGCauCcgCGCCgugaACGGCCAGAa -3'
miRNA:   3'- ggaCGCGauGuaGCGGa---UGCCGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 31625 0.69 0.489533
Target:  5'- aCCUGCGCgGCAagcCGaCCUACGGCg--- -3'
miRNA:   3'- -GGACGCGaUGUa--GC-GGAUGCCGgucu -5'
24065 3' -56.3 NC_005262.1 + 8155 0.69 0.499676
Target:  5'- uCCUGCGCUACGuggcaaagaUCGCCcuggACaucagcacGCCGGAa -3'
miRNA:   3'- -GGACGCGAUGU---------AGCGGa---UGc-------CGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 35103 0.69 0.520231
Target:  5'- gCUGCGUgGCGUCGCCUucccGCuGCCGa- -3'
miRNA:   3'- gGACGCGaUGUAGCGGA----UGcCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 58619 0.69 0.521268
Target:  5'- -aUGCGCUGCAcCGUCaggcucggcagucgaGCGGCCGGGc -3'
miRNA:   3'- ggACGCGAUGUaGCGGa--------------UGCCGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 6112 0.69 0.530633
Target:  5'- gUUGCGgaACggcggcacaGUCGCCUcgaugugcGCGGCCGGGa -3'
miRNA:   3'- gGACGCgaUG---------UAGCGGA--------UGCCGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 40520 0.7 0.449982
Target:  5'- aCCUGCGCgacaaguuCAUCGUCgcgGCGGgCGGc -3'
miRNA:   3'- -GGACGCGau------GUAGCGGa--UGCCgGUCu -5'
24065 3' -56.3 NC_005262.1 + 60951 0.7 0.469545
Target:  5'- --cGCGCUuucgccgcGCAUUGCCU-CGGCCAu- -3'
miRNA:   3'- ggaCGCGA--------UGUAGCGGAuGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 52939 0.7 0.459708
Target:  5'- gCCUGCGCcgccuggGCuUCGCCgGCGGCaAGGu -3'
miRNA:   3'- -GGACGCGa------UGuAGCGGaUGCCGgUCU- -5'
24065 3' -56.3 NC_005262.1 + 52509 0.71 0.402227
Target:  5'- aUUGCGCUuugccgcgccuccGCgAUCGCCUccagcgucuCGGCCAGAa -3'
miRNA:   3'- gGACGCGA-------------UG-UAGCGGAu--------GCCGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 8121 0.71 0.412255
Target:  5'- --cGCGCUGCGUCaGuCCUgacGCGaGCCGGAg -3'
miRNA:   3'- ggaCGCGAUGUAG-C-GGA---UGC-CGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 46599 0.71 0.430877
Target:  5'- gCUGCGCggGCAggggCGUC-GCGGUCGGAg -3'
miRNA:   3'- gGACGCGa-UGUa---GCGGaUGCCGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 62952 0.71 0.403132
Target:  5'- uUUGCGC-GCGUCGCUUcCGGCCGa- -3'
miRNA:   3'- gGACGCGaUGUAGCGGAuGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 28973 0.71 0.412255
Target:  5'- aCCUGCGCc---UCGCCUuccagcagcACGGCgAGAa -3'
miRNA:   3'- -GGACGCGauguAGCGGA---------UGCCGgUCU- -5'
24065 3' -56.3 NC_005262.1 + 16778 0.72 0.359491
Target:  5'- aCCUGCGUgacgaUGCAcuccUCGCCcggcUGCGGCCAc- -3'
miRNA:   3'- -GGACGCG-----AUGU----AGCGG----AUGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 45074 0.72 0.342983
Target:  5'- gCCUGCcgcgcggacuGCUGCAcgucggcccUCGCCUcgGCGGCCAu- -3'
miRNA:   3'- -GGACG----------CGAUGU---------AGCGGA--UGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 11571 0.73 0.31926
Target:  5'- --cGCGCUGCuaUGCCggcgGCGGCCAGc -3'
miRNA:   3'- ggaCGCGAUGuaGCGGa---UGCCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 42523 0.73 0.334936
Target:  5'- -aUGCGCUGCuUCGUgaugUUGCGGCCGGc -3'
miRNA:   3'- ggACGCGAUGuAGCG----GAUGCCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 25815 0.74 0.275567
Target:  5'- gCCUGCGCg--AUCGCCU-CGGCCu-- -3'
miRNA:   3'- -GGACGCGaugUAGCGGAuGCCGGucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.