miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24065 3' -56.3 NC_005262.1 + 58619 0.69 0.521268
Target:  5'- -aUGCGCUGCAcCGUCaggcucggcagucgaGCGGCCGGGc -3'
miRNA:   3'- ggACGCGAUGUaGCGGa--------------UGCCGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 8155 0.69 0.499676
Target:  5'- uCCUGCGCUACGuggcaaagaUCGCCcuggACaucagcacGCCGGAa -3'
miRNA:   3'- -GGACGCGAUGU---------AGCGGa---UGc-------CGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 35103 0.69 0.520231
Target:  5'- gCUGCGUgGCGUCGCCUucccGCuGCCGa- -3'
miRNA:   3'- gGACGCGaUGUAGCGGA----UGcCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 6112 0.69 0.530633
Target:  5'- gUUGCGgaACggcggcacaGUCGCCUcgaugugcGCGGCCGGGa -3'
miRNA:   3'- gGACGCgaUG---------UAGCGGA--------UGCCGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 38930 0.69 0.524382
Target:  5'- gCgaGCGCUGCcgUGCCUuccugagcacgcgagACGGUCAGc -3'
miRNA:   3'- -GgaCGCGAUGuaGCGGA---------------UGCCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 56844 0.68 0.600841
Target:  5'- --aGCGCU-CGUCGCCcgacgccagcgcgGCGGCCAu- -3'
miRNA:   3'- ggaCGCGAuGUAGCGGa------------UGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 23168 0.68 0.551655
Target:  5'- ---cCGCUGCGUCGauCCUGCGGgCGGGu -3'
miRNA:   3'- ggacGCGAUGUAGC--GGAUGCCgGUCU- -5'
24065 3' -56.3 NC_005262.1 + 51039 0.68 0.572923
Target:  5'- gCCUGCGUcgGCuUCaGCUcgGCGGCCGGc -3'
miRNA:   3'- -GGACGCGa-UGuAG-CGGa-UGCCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 32721 0.68 0.58363
Target:  5'- gCCcGCGCa--AUCGCCaUACGGCguGGu -3'
miRNA:   3'- -GGaCGCGaugUAGCGG-AUGCCGguCU- -5'
24065 3' -56.3 NC_005262.1 + 58944 0.68 0.58363
Target:  5'- gCUGCGCcggcgugACGUCGCCgaucUGCGuGCCGa- -3'
miRNA:   3'- gGACGCGa------UGUAGCGG----AUGC-CGGUcu -5'
24065 3' -56.3 NC_005262.1 + 55384 0.67 0.6592
Target:  5'- aCUGCGCcGCGUacucgucggacaUGCCgaUGCGGCCGa- -3'
miRNA:   3'- gGACGCGaUGUA------------GCGG--AUGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 51369 0.67 0.6592
Target:  5'- -aUGCGCaGCA--GCCgGCGGCCGGu -3'
miRNA:   3'- ggACGCGaUGUagCGGaUGCCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 50473 0.67 0.6592
Target:  5'- gCC-GCGCgguucGCGUCGCC-ACGGUCGa- -3'
miRNA:   3'- -GGaCGCGa----UGUAGCGGaUGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 32346 0.67 0.615955
Target:  5'- --gGCGUg--AUCGCCUACGGCaCGGc -3'
miRNA:   3'- ggaCGCGaugUAGCGGAUGCCG-GUCu -5'
24065 3' -56.3 NC_005262.1 + 16050 0.67 0.6592
Target:  5'- aCC-GcCGCUACcgCGaCUUGCGGCCGa- -3'
miRNA:   3'- -GGaC-GCGAUGuaGC-GGAUGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 42740 0.67 0.626769
Target:  5'- --cGCGCU-CggCGCCUACGGCaCGa- -3'
miRNA:   3'- ggaCGCGAuGuaGCGGAUGCCG-GUcu -5'
24065 3' -56.3 NC_005262.1 + 22234 0.67 0.626769
Target:  5'- cUCgGCGaUGCGggcaGCCgcgGCGGCCAGAc -3'
miRNA:   3'- -GGaCGCgAUGUag--CGGa--UGCCGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 49913 0.67 0.637587
Target:  5'- gCCUucgcGCGCUcCAUCGC--GCGGCCGa- -3'
miRNA:   3'- -GGA----CGCGAuGUAGCGgaUGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 56773 0.67 0.637587
Target:  5'- aCgaGCGCUACAUgaaGCUggcCGGCCuGAa -3'
miRNA:   3'- -GgaCGCGAUGUAg--CGGau-GCCGGuCU- -5'
24065 3' -56.3 NC_005262.1 + 58904 0.67 0.637587
Target:  5'- gCUGCGCgauCAg-GCCgGCGGCCcGAc -3'
miRNA:   3'- gGACGCGau-GUagCGGaUGCCGGuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.