Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24065 | 3' | -56.3 | NC_005262.1 | + | 48312 | 1.11 | 0.000732 |
Target: 5'- gCCUGCGCUACAUCGCCUACGGCCAGAa -3' miRNA: 3'- -GGACGCGAUGUAGCGGAUGCCGGUCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 36413 | 0.77 | 0.172933 |
Target: 5'- aCCUGUGCcgGCAUCGCUggAUGGCaCGGAa -3' miRNA: 3'- -GGACGCGa-UGUAGCGGa-UGCCG-GUCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 50410 | 0.76 | 0.213554 |
Target: 5'- uCCUGCGCgGCGg-GCgCUGCGGCCGGc -3' miRNA: 3'- -GGACGCGaUGUagCG-GAUGCCGGUCu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 7355 | 0.75 | 0.236789 |
Target: 5'- gCC-GCGCUuagGCGUCGCCacgACGGUCGGGc -3' miRNA: 3'- -GGaCGCGA---UGUAGCGGa--UGCCGGUCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 25815 | 0.74 | 0.275567 |
Target: 5'- gCCUGCGCg--AUCGCCU-CGGCCu-- -3' miRNA: 3'- -GGACGCGaugUAGCGGAuGCCGGucu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 11571 | 0.73 | 0.31926 |
Target: 5'- --cGCGCUGCuaUGCCggcgGCGGCCAGc -3' miRNA: 3'- ggaCGCGAUGuaGCGGa---UGCCGGUCu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 42523 | 0.73 | 0.334936 |
Target: 5'- -aUGCGCUGCuUCGUgaugUUGCGGCCGGc -3' miRNA: 3'- ggACGCGAUGuAGCG----GAUGCCGGUCu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 45074 | 0.72 | 0.342983 |
Target: 5'- gCCUGCcgcgcggacuGCUGCAcgucggcccUCGCCUcgGCGGCCAu- -3' miRNA: 3'- -GGACG----------CGAUGU---------AGCGGA--UGCCGGUcu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 16778 | 0.72 | 0.359491 |
Target: 5'- aCCUGCGUgacgaUGCAcuccUCGCCcggcUGCGGCCAc- -3' miRNA: 3'- -GGACGCG-----AUGU----AGCGG----AUGCCGGUcu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 52509 | 0.71 | 0.402227 |
Target: 5'- aUUGCGCUuugccgcgccuccGCgAUCGCCUccagcgucuCGGCCAGAa -3' miRNA: 3'- gGACGCGA-------------UG-UAGCGGAu--------GCCGGUCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 62952 | 0.71 | 0.403132 |
Target: 5'- uUUGCGC-GCGUCGCUUcCGGCCGa- -3' miRNA: 3'- gGACGCGaUGUAGCGGAuGCCGGUcu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 8121 | 0.71 | 0.412255 |
Target: 5'- --cGCGCUGCGUCaGuCCUgacGCGaGCCGGAg -3' miRNA: 3'- ggaCGCGAUGUAG-C-GGA---UGC-CGGUCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 28973 | 0.71 | 0.412255 |
Target: 5'- aCCUGCGCc---UCGCCUuccagcagcACGGCgAGAa -3' miRNA: 3'- -GGACGCGauguAGCGGA---------UGCCGgUCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 46599 | 0.71 | 0.430877 |
Target: 5'- gCUGCGCggGCAggggCGUC-GCGGUCGGAg -3' miRNA: 3'- gGACGCGa-UGUa---GCGGaUGCCGGUCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 40520 | 0.7 | 0.449982 |
Target: 5'- aCCUGCGCgacaaguuCAUCGUCgcgGCGGgCGGc -3' miRNA: 3'- -GGACGCGau------GUAGCGGa--UGCCgGUCu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 52939 | 0.7 | 0.459708 |
Target: 5'- gCCUGCGCcgccuggGCuUCGCCgGCGGCaAGGu -3' miRNA: 3'- -GGACGCGa------UGuAGCGGaUGCCGgUCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 60951 | 0.7 | 0.469545 |
Target: 5'- --cGCGCUuucgccgcGCAUUGCCU-CGGCCAu- -3' miRNA: 3'- ggaCGCGA--------UGUAGCGGAuGCCGGUcu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 31625 | 0.69 | 0.489533 |
Target: 5'- aCCUGCGCgGCAagcCGaCCUACGGCg--- -3' miRNA: 3'- -GGACGCGaUGUa--GC-GGAUGCCGgucu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 29297 | 0.69 | 0.489533 |
Target: 5'- --aGCGCauCcgCGCCgugaACGGCCAGAa -3' miRNA: 3'- ggaCGCGauGuaGCGGa---UGCCGGUCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 24040 | 0.69 | 0.499676 |
Target: 5'- aCUGCGCgccACAcUCGCCgagcuUGGCUGGAc -3' miRNA: 3'- gGACGCGa--UGU-AGCGGau---GCCGGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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