miRNA: 3'- -GgACGCGa---UGUAGCGGau-----GCCGgucu -5'
miRNA: 3'- ggACGcGAUGuAGCGGA---UGCCGG--UCU- -5'
miRNA: 3'- -GGACGCGauguaGCGGa-UGCCGgucu -5'
miRNA: 3'- ggaCGCGa---UGUA-GcGGAUGCCGguCU- -5'
Results 61 - 64 of 64 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 24065 | 3' | -56.3 | NC_005262.1 | + | 12950 | 0.66 | 0.723125 |
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Target: 5'- gCgUGCGCgacgGCAUCGCCgaccgcuCGGCg--- -3' miRNA: 3'- -GgACGCGa---UGUAGCGGau-----GCCGgucu -5' |
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| 24065 | 3' | -56.3 | NC_005262.1 | + | 30770 | 0.66 | 0.723125 |
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Target: 5'- -aUGC-CUACcUCGCCUcgcGCGGCUaaGGAg -3' miRNA: 3'- ggACGcGAUGuAGCGGA---UGCCGG--UCU- -5' |
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| 24065 | 3' | -56.3 | NC_005262.1 | + | 2655 | 0.66 | 0.723125 |
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Target: 5'- gCCUGCGCgg---CGCCggGCGGCg--- -3' miRNA: 3'- -GGACGCGauguaGCGGa-UGCCGgucu -5' |
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| 24065 | 3' | -56.3 | NC_005262.1 | + | 28578 | 0.66 | 0.723125 |
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Target: 5'- --cGCGCgacgGCAUgC-CCUACGGCguGAu -3' miRNA: 3'- ggaCGCGa---UGUA-GcGGAUGCCGguCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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