miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24065 3' -56.3 NC_005262.1 + 41557 0.67 0.648401
Target:  5'- -gUGCGCcgGCAUCugGgCUGCGGUCAGc -3'
miRNA:   3'- ggACGCGa-UGUAG--CgGAUGCCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 54485 0.67 0.64732
Target:  5'- gCUUGCGCacgACGUUGCCcgacaggUACGcGUCGGAc -3'
miRNA:   3'- -GGACGCGa--UGUAGCGG-------AUGC-CGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 47846 0.67 0.637587
Target:  5'- gCCcGCGCgaugccgGguUCGCC-GCGGCCGGc -3'
miRNA:   3'- -GGaCGCGa------UguAGCGGaUGCCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 6956 0.67 0.637587
Target:  5'- --cGCgGCcgGCAUCGCCgaggacUACGGCCuGAu -3'
miRNA:   3'- ggaCG-CGa-UGUAGCGG------AUGCCGGuCU- -5'
24065 3' -56.3 NC_005262.1 + 49913 0.67 0.637587
Target:  5'- gCCUucgcGCGCUcCAUCGC--GCGGCCGa- -3'
miRNA:   3'- -GGA----CGCGAuGUAGCGgaUGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 58904 0.67 0.637587
Target:  5'- gCUGCGCgauCAg-GCCgGCGGCCcGAc -3'
miRNA:   3'- gGACGCGau-GUagCGGaUGCCGGuCU- -5'
24065 3' -56.3 NC_005262.1 + 56773 0.67 0.637587
Target:  5'- aCgaGCGCUACAUgaaGCUggcCGGCCuGAa -3'
miRNA:   3'- -GgaCGCGAUGUAg--CGGau-GCCGGuCU- -5'
24065 3' -56.3 NC_005262.1 + 11651 0.67 0.626769
Target:  5'- --gGCGCcgGCGUCGCgCUGCacgcuGGCCGGc -3'
miRNA:   3'- ggaCGCGa-UGUAGCG-GAUG-----CCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 11057 0.67 0.626769
Target:  5'- --gGcCGCaGCGUCGCCUgagcccgaGCGGCCAa- -3'
miRNA:   3'- ggaC-GCGaUGUAGCGGA--------UGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 42740 0.67 0.626769
Target:  5'- --cGCGCU-CggCGCCUACGGCaCGa- -3'
miRNA:   3'- ggaCGCGAuGuaGCGGAUGCCG-GUcu -5'
24065 3' -56.3 NC_005262.1 + 58099 0.67 0.626769
Target:  5'- gCUGCGCUGUAcUCGCCcUGCuGGCCu-- -3'
miRNA:   3'- gGACGCGAUGU-AGCGG-AUG-CCGGucu -5'
24065 3' -56.3 NC_005262.1 + 22234 0.67 0.626769
Target:  5'- cUCgGCGaUGCGggcaGCCgcgGCGGCCAGAc -3'
miRNA:   3'- -GGaCGCgAUGUag--CGGa--UGCCGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 59904 0.67 0.615955
Target:  5'- aCCUGa--UACGUggCGCCUGCGgGCCGGu -3'
miRNA:   3'- -GGACgcgAUGUA--GCGGAUGC-CGGUCu -5'
24065 3' -56.3 NC_005262.1 + 32346 0.67 0.615955
Target:  5'- --gGCGUg--AUCGCCUACGGCaCGGc -3'
miRNA:   3'- ggaCGCGaugUAGCGGAUGCCG-GUCu -5'
24065 3' -56.3 NC_005262.1 + 56844 0.68 0.600841
Target:  5'- --aGCGCU-CGUCGCCcgacgccagcgcgGCGGCCAu- -3'
miRNA:   3'- ggaCGCGAuGUAGCGGa------------UGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 32721 0.68 0.58363
Target:  5'- gCCcGCGCa--AUCGCCaUACGGCguGGu -3'
miRNA:   3'- -GGaCGCGaugUAGCGG-AUGCCGguCU- -5'
24065 3' -56.3 NC_005262.1 + 58944 0.68 0.58363
Target:  5'- gCUGCGCcggcgugACGUCGCCgaucUGCGuGCCGa- -3'
miRNA:   3'- gGACGCGa------UGUAGCGG----AUGC-CGGUcu -5'
24065 3' -56.3 NC_005262.1 + 51039 0.68 0.572923
Target:  5'- gCCUGCGUcgGCuUCaGCUcgGCGGCCGGc -3'
miRNA:   3'- -GGACGCGa-UGuAG-CGGa-UGCCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 23168 0.68 0.551655
Target:  5'- ---cCGCUGCGUCGauCCUGCGGgCGGGu -3'
miRNA:   3'- ggacGCGAUGUAGC--GGAUGCCgGUCU- -5'
24065 3' -56.3 NC_005262.1 + 6112 0.69 0.530633
Target:  5'- gUUGCGgaACggcggcacaGUCGCCUcgaugugcGCGGCCGGGa -3'
miRNA:   3'- gGACGCgaUG---------UAGCGGA--------UGCCGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.