miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24065 3' -56.3 NC_005262.1 + 1844 0.66 0.723125
Target:  5'- gCUGCGCaUGCgGUUGCCUGCuuGGUCGc- -3'
miRNA:   3'- gGACGCG-AUG-UAGCGGAUG--CCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 2655 0.66 0.723125
Target:  5'- gCCUGCGCgg---CGCCggGCGGCg--- -3'
miRNA:   3'- -GGACGCGauguaGCGGa-UGCCGgucu -5'
24065 3' -56.3 NC_005262.1 + 2823 0.66 0.680715
Target:  5'- aCCUGCGCcucgACcUCGUUUGCGcGCUGGc -3'
miRNA:   3'- -GGACGCGa---UGuAGCGGAUGC-CGGUCu -5'
24065 3' -56.3 NC_005262.1 + 6112 0.69 0.530633
Target:  5'- gUUGCGgaACggcggcacaGUCGCCUcgaugugcGCGGCCGGGa -3'
miRNA:   3'- gGACGCgaUG---------UAGCGGA--------UGCCGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 6956 0.67 0.637587
Target:  5'- --cGCgGCcgGCAUCGCCgaggacUACGGCCuGAu -3'
miRNA:   3'- ggaCG-CGa-UGUAGCGG------AUGCCGGuCU- -5'
24065 3' -56.3 NC_005262.1 + 7355 0.75 0.236789
Target:  5'- gCC-GCGCUuagGCGUCGCCacgACGGUCGGGc -3'
miRNA:   3'- -GGaCGCGA---UGUAGCGGa--UGCCGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 8121 0.71 0.412255
Target:  5'- --cGCGCUGCGUCaGuCCUgacGCGaGCCGGAg -3'
miRNA:   3'- ggaCGCGAUGUAG-C-GGA---UGC-CGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 8155 0.69 0.499676
Target:  5'- uCCUGCGCUACGuggcaaagaUCGCCcuggACaucagcacGCCGGAa -3'
miRNA:   3'- -GGACGCGAUGU---------AGCGGa---UGc-------CGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 8283 0.66 0.680715
Target:  5'- gCUGC-CcGCGUCGCUcgcgagGCGGCCAaGAa -3'
miRNA:   3'- gGACGcGaUGUAGCGGa-----UGCCGGU-CU- -5'
24065 3' -56.3 NC_005262.1 + 11057 0.67 0.626769
Target:  5'- --gGcCGCaGCGUCGCCUgagcccgaGCGGCCAa- -3'
miRNA:   3'- ggaC-GCGaUGUAGCGGA--------UGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 11571 0.73 0.31926
Target:  5'- --cGCGCUGCuaUGCCggcgGCGGCCAGc -3'
miRNA:   3'- ggaCGCGAUGuaGCGGa---UGCCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 11651 0.67 0.626769
Target:  5'- --gGCGCcgGCGUCGCgCUGCacgcuGGCCGGc -3'
miRNA:   3'- ggaCGCGa-UGUAGCG-GAUG-----CCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 12950 0.66 0.723125
Target:  5'- gCgUGCGCgacgGCAUCGCCgaccgcuCGGCg--- -3'
miRNA:   3'- -GgACGCGa---UGUAGCGGau-----GCCGgucu -5'
24065 3' -56.3 NC_005262.1 + 16050 0.67 0.6592
Target:  5'- aCC-GcCGCUACcgCGaCUUGCGGCCGa- -3'
miRNA:   3'- -GGaC-GCGAUGuaGC-GGAUGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 16778 0.72 0.359491
Target:  5'- aCCUGCGUgacgaUGCAcuccUCGCCcggcUGCGGCCAc- -3'
miRNA:   3'- -GGACGCG-----AUGU----AGCGG----AUGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 22234 0.67 0.626769
Target:  5'- cUCgGCGaUGCGggcaGCCgcgGCGGCCAGAc -3'
miRNA:   3'- -GGaCGCgAUGUag--CGGa--UGCCGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 23168 0.68 0.551655
Target:  5'- ---cCGCUGCGUCGauCCUGCGGgCGGGu -3'
miRNA:   3'- ggacGCGAUGUAGC--GGAUGCCgGUCU- -5'
24065 3' -56.3 NC_005262.1 + 24040 0.69 0.499676
Target:  5'- aCUGCGCgccACAcUCGCCgagcuUGGCUGGAc -3'
miRNA:   3'- gGACGCGa--UGU-AGCGGau---GCCGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 25815 0.74 0.275567
Target:  5'- gCCUGCGCg--AUCGCCU-CGGCCu-- -3'
miRNA:   3'- -GGACGCGaugUAGCGGAuGCCGGucu -5'
24065 3' -56.3 NC_005262.1 + 28343 0.66 0.702052
Target:  5'- cCCgUGCGCgUGCAgCGCCUcaAgGGCCGc- -3'
miRNA:   3'- -GG-ACGCG-AUGUaGCGGA--UgCCGGUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.