Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24065 | 3' | -56.3 | NC_005262.1 | + | 50170 | 0.66 | 0.712627 |
Target: 5'- gCCUGCGCUaccugacgaaGCAg-GCCaagcucaacgGCGGCUGGAc -3' miRNA: 3'- -GGACGCGA----------UGUagCGGa---------UGCCGGUCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 50410 | 0.76 | 0.213554 |
Target: 5'- uCCUGCGCgGCGg-GCgCUGCGGCCGGc -3' miRNA: 3'- -GGACGCGaUGUagCG-GAUGCCGGUCu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 50473 | 0.67 | 0.6592 |
Target: 5'- gCC-GCGCgguucGCGUCGCC-ACGGUCGa- -3' miRNA: 3'- -GGaCGCGa----UGUAGCGGaUGCCGGUcu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 51039 | 0.68 | 0.572923 |
Target: 5'- gCCUGCGUcgGCuUCaGCUcgGCGGCCGGc -3' miRNA: 3'- -GGACGCGa-UGuAG-CGGa-UGCCGGUCu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 51369 | 0.67 | 0.6592 |
Target: 5'- -aUGCGCaGCA--GCCgGCGGCCGGu -3' miRNA: 3'- ggACGCGaUGUagCGGaUGCCGGUCu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 51604 | 0.66 | 0.712627 |
Target: 5'- gUUGCGC-ACGgucgucUCGCCguUGCGGCCGa- -3' miRNA: 3'- gGACGCGaUGU------AGCGG--AUGCCGGUcu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 52509 | 0.71 | 0.402227 |
Target: 5'- aUUGCGCUuugccgcgccuccGCgAUCGCCUccagcgucuCGGCCAGAa -3' miRNA: 3'- gGACGCGA-------------UG-UAGCGGAu--------GCCGGUCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 52939 | 0.7 | 0.459708 |
Target: 5'- gCCUGCGCcgccuggGCuUCGCCgGCGGCaAGGu -3' miRNA: 3'- -GGACGCGa------UGuAGCGGaUGCCGgUCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 54485 | 0.67 | 0.64732 |
Target: 5'- gCUUGCGCacgACGUUGCCcgacaggUACGcGUCGGAc -3' miRNA: 3'- -GGACGCGa--UGUAGCGG-------AUGC-CGGUCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 55384 | 0.67 | 0.6592 |
Target: 5'- aCUGCGCcGCGUacucgucggacaUGCCgaUGCGGCCGa- -3' miRNA: 3'- gGACGCGaUGUA------------GCGG--AUGCCGGUcu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 56773 | 0.67 | 0.637587 |
Target: 5'- aCgaGCGCUACAUgaaGCUggcCGGCCuGAa -3' miRNA: 3'- -GgaCGCGAUGUAg--CGGau-GCCGGuCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 56844 | 0.68 | 0.600841 |
Target: 5'- --aGCGCU-CGUCGCCcgacgccagcgcgGCGGCCAu- -3' miRNA: 3'- ggaCGCGAuGUAGCGGa------------UGCCGGUcu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 58099 | 0.67 | 0.626769 |
Target: 5'- gCUGCGCUGUAcUCGCCcUGCuGGCCu-- -3' miRNA: 3'- gGACGCGAUGU-AGCGG-AUG-CCGGucu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 58619 | 0.69 | 0.521268 |
Target: 5'- -aUGCGCUGCAcCGUCaggcucggcagucgaGCGGCCGGGc -3' miRNA: 3'- ggACGCGAUGUaGCGGa--------------UGCCGGUCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 58904 | 0.67 | 0.637587 |
Target: 5'- gCUGCGCgauCAg-GCCgGCGGCCcGAc -3' miRNA: 3'- gGACGCGau-GUagCGGaUGCCGGuCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 58944 | 0.68 | 0.58363 |
Target: 5'- gCUGCGCcggcgugACGUCGCCgaucUGCGuGCCGa- -3' miRNA: 3'- gGACGCGa------UGUAGCGG----AUGC-CGGUcu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 59070 | 0.66 | 0.680715 |
Target: 5'- aCgGCGCgggagGCGUgaggcCGCCgGCGGCCGGc -3' miRNA: 3'- gGaCGCGa----UGUA-----GCGGaUGCCGGUCu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 59713 | 0.66 | 0.702052 |
Target: 5'- --gGCGCUACGUCGCC---GGCaAGGu -3' miRNA: 3'- ggaCGCGAUGUAGCGGaugCCGgUCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 59904 | 0.67 | 0.615955 |
Target: 5'- aCCUGa--UACGUggCGCCUGCGgGCCGGu -3' miRNA: 3'- -GGACgcgAUGUA--GCGGAUGC-CGGUCu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 60951 | 0.7 | 0.469545 |
Target: 5'- --cGCGCUuucgccgcGCAUUGCCU-CGGCCAu- -3' miRNA: 3'- ggaCGCGA--------UGUAGCGGAuGCCGGUcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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