miRNA: 3'- ggaCGCGA-----UGU---AGCGgaUGCCGGUCU- -5'
miRNA: 3'- -GGACGCGa--UGUAgCGGAuGCCGgucu -5'
miRNA: 3'- gGACGCGaUGUAGCGGAuGCCGGUcu -5'
miRNA: 3'- ggaCGCGaUGUAGCGGaugCCGGUcu -5'
Results 61 - 64 of 64 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24065 | 3' | -56.3 | NC_005262.1 | + | 61473 | 0.66 | 0.712627 |
|
Target: 5'- --aGCGCUagacgACAucuUCGC--GCGGCCGGAa -3' miRNA: 3'- ggaCGCGA-----UGU---AGCGgaUGCCGGUCU- -5' |
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| 24065 | 3' | -56.3 | NC_005262.1 | + | 61803 | 0.66 | 0.723125 |
|
Target: 5'- gCCUGCGCggcGCAU-GCCU-CGGCg--- -3' miRNA: 3'- -GGACGCGa--UGUAgCGGAuGCCGgucu -5' |
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| 24065 | 3' | -56.3 | NC_005262.1 | + | 62952 | 0.71 | 0.403132 |
|
Target: 5'- uUUGCGC-GCGUCGCUUcCGGCCGa- -3' miRNA: 3'- gGACGCGaUGUAGCGGAuGCCGGUcu -5' |
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| 24065 | 3' | -56.3 | NC_005262.1 | + | 63327 | 0.66 | 0.712627 |
|
Target: 5'- --cGCGCcGCGUCGCCga-GGUCAa- -3' miRNA: 3'- ggaCGCGaUGUAGCGGaugCCGGUcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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