miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24065 3' -56.3 NC_005262.1 + 51039 0.68 0.572923
Target:  5'- gCCUGCGUcgGCuUCaGCUcgGCGGCCGGc -3'
miRNA:   3'- -GGACGCGa-UGuAG-CGGa-UGCCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 50473 0.67 0.6592
Target:  5'- gCC-GCGCgguucGCGUCGCC-ACGGUCGa- -3'
miRNA:   3'- -GGaCGCGa----UGUAGCGGaUGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 50410 0.76 0.213554
Target:  5'- uCCUGCGCgGCGg-GCgCUGCGGCCGGc -3'
miRNA:   3'- -GGACGCGaUGUagCG-GAUGCCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 50170 0.66 0.712627
Target:  5'- gCCUGCGCUaccugacgaaGCAg-GCCaagcucaacgGCGGCUGGAc -3'
miRNA:   3'- -GGACGCGA----------UGUagCGGa---------UGCCGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 49913 0.67 0.637587
Target:  5'- gCCUucgcGCGCUcCAUCGC--GCGGCCGa- -3'
miRNA:   3'- -GGA----CGCGAuGUAGCGgaUGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 49306 0.66 0.680715
Target:  5'- aCUGCGCgccgcCGagGCCgcccuCGGCCAGc -3'
miRNA:   3'- gGACGCGau---GUagCGGau---GCCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 48312 1.11 0.000732
Target:  5'- gCCUGCGCUACAUCGCCUACGGCCAGAa -3'
miRNA:   3'- -GGACGCGAUGUAGCGGAUGCCGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 47846 0.67 0.637587
Target:  5'- gCCcGCGCgaugccgGguUCGCC-GCGGCCGGc -3'
miRNA:   3'- -GGaCGCGa------UguAGCGGaUGCCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 46599 0.71 0.430877
Target:  5'- gCUGCGCggGCAggggCGUC-GCGGUCGGAg -3'
miRNA:   3'- gGACGCGa-UGUa---GCGGaUGCCGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 45074 0.72 0.342983
Target:  5'- gCCUGCcgcgcggacuGCUGCAcgucggcccUCGCCUcgGCGGCCAu- -3'
miRNA:   3'- -GGACG----------CGAUGU---------AGCGGA--UGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 42740 0.67 0.626769
Target:  5'- --cGCGCU-CggCGCCUACGGCaCGa- -3'
miRNA:   3'- ggaCGCGAuGuaGCGGAUGCCG-GUcu -5'
24065 3' -56.3 NC_005262.1 + 42523 0.73 0.334936
Target:  5'- -aUGCGCUGCuUCGUgaugUUGCGGCCGGc -3'
miRNA:   3'- ggACGCGAUGuAGCG----GAUGCCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 41557 0.67 0.648401
Target:  5'- -gUGCGCcgGCAUCugGgCUGCGGUCAGc -3'
miRNA:   3'- ggACGCGa-UGUAG--CgGAUGCCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 40520 0.7 0.449982
Target:  5'- aCCUGCGCgacaaguuCAUCGUCgcgGCGGgCGGc -3'
miRNA:   3'- -GGACGCGau------GUAGCGGa--UGCCgGUCu -5'
24065 3' -56.3 NC_005262.1 + 38930 0.69 0.524382
Target:  5'- gCgaGCGCUGCcgUGCCUuccugagcacgcgagACGGUCAGc -3'
miRNA:   3'- -GgaCGCGAUGuaGCGGA---------------UGCCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 36413 0.77 0.172933
Target:  5'- aCCUGUGCcgGCAUCGCUggAUGGCaCGGAa -3'
miRNA:   3'- -GGACGCGa-UGUAGCGGa-UGCCG-GUCU- -5'
24065 3' -56.3 NC_005262.1 + 35103 0.69 0.520231
Target:  5'- gCUGCGUgGCGUCGCCUucccGCuGCCGa- -3'
miRNA:   3'- gGACGCGaUGUAGCGGA----UGcCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 32721 0.68 0.58363
Target:  5'- gCCcGCGCa--AUCGCCaUACGGCguGGu -3'
miRNA:   3'- -GGaCGCGaugUAGCGG-AUGCCGguCU- -5'
24065 3' -56.3 NC_005262.1 + 32346 0.67 0.615955
Target:  5'- --gGCGUg--AUCGCCUACGGCaCGGc -3'
miRNA:   3'- ggaCGCGaugUAGCGGAUGCCG-GUCu -5'
24065 3' -56.3 NC_005262.1 + 31625 0.69 0.489533
Target:  5'- aCCUGCGCgGCAagcCGaCCUACGGCg--- -3'
miRNA:   3'- -GGACGCGaUGUa--GC-GGAUGCCGgucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.