miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24065 3' -56.3 NC_005262.1 + 16050 0.67 0.6592
Target:  5'- aCC-GcCGCUACcgCGaCUUGCGGCCGa- -3'
miRNA:   3'- -GGaC-GCGAUGuaGC-GGAUGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 58619 0.69 0.521268
Target:  5'- -aUGCGCUGCAcCGUCaggcucggcagucgaGCGGCCGGGc -3'
miRNA:   3'- ggACGCGAUGUaGCGGa--------------UGCCGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 6112 0.69 0.530633
Target:  5'- gUUGCGgaACggcggcacaGUCGCCUcgaugugcGCGGCCGGGa -3'
miRNA:   3'- gGACGCgaUG---------UAGCGGA--------UGCCGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 32346 0.67 0.615955
Target:  5'- --gGCGUg--AUCGCCUACGGCaCGGc -3'
miRNA:   3'- ggaCGCGaugUAGCGGAUGCCG-GUCu -5'
24065 3' -56.3 NC_005262.1 + 42740 0.67 0.626769
Target:  5'- --cGCGCU-CggCGCCUACGGCaCGa- -3'
miRNA:   3'- ggaCGCGAuGuaGCGGAUGCCG-GUcu -5'
24065 3' -56.3 NC_005262.1 + 11057 0.67 0.626769
Target:  5'- --gGcCGCaGCGUCGCCUgagcccgaGCGGCCAa- -3'
miRNA:   3'- ggaC-GCGaUGUAGCGGA--------UGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 11651 0.67 0.626769
Target:  5'- --gGCGCcgGCGUCGCgCUGCacgcuGGCCGGc -3'
miRNA:   3'- ggaCGCGa-UGUAGCG-GAUG-----CCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 56773 0.67 0.637587
Target:  5'- aCgaGCGCUACAUgaaGCUggcCGGCCuGAa -3'
miRNA:   3'- -GgaCGCGAUGUAg--CGGau-GCCGGuCU- -5'
24065 3' -56.3 NC_005262.1 + 58904 0.67 0.637587
Target:  5'- gCUGCGCgauCAg-GCCgGCGGCCcGAc -3'
miRNA:   3'- gGACGCGau-GUagCGGaUGCCGGuCU- -5'
24065 3' -56.3 NC_005262.1 + 35103 0.69 0.520231
Target:  5'- gCUGCGUgGCGUCGCCUucccGCuGCCGa- -3'
miRNA:   3'- gGACGCGaUGUAGCGGA----UGcCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 8155 0.69 0.499676
Target:  5'- uCCUGCGCUACGuggcaaagaUCGCCcuggACaucagcacGCCGGAa -3'
miRNA:   3'- -GGACGCGAUGU---------AGCGGa---UGc-------CGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 31625 0.69 0.489533
Target:  5'- aCCUGCGCgGCAagcCGaCCUACGGCg--- -3'
miRNA:   3'- -GGACGCGaUGUa--GC-GGAUGCCGgucu -5'
24065 3' -56.3 NC_005262.1 + 36413 0.77 0.172933
Target:  5'- aCCUGUGCcgGCAUCGCUggAUGGCaCGGAa -3'
miRNA:   3'- -GGACGCGa-UGUAGCGGa-UGCCG-GUCU- -5'
24065 3' -56.3 NC_005262.1 + 7355 0.75 0.236789
Target:  5'- gCC-GCGCUuagGCGUCGCCacgACGGUCGGGc -3'
miRNA:   3'- -GGaCGCGA---UGUAGCGGa--UGCCGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 11571 0.73 0.31926
Target:  5'- --cGCGCUGCuaUGCCggcgGCGGCCAGc -3'
miRNA:   3'- ggaCGCGAUGuaGCGGa---UGCCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 62952 0.71 0.403132
Target:  5'- uUUGCGC-GCGUCGCUUcCGGCCGa- -3'
miRNA:   3'- gGACGCGaUGUAGCGGAuGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 28973 0.71 0.412255
Target:  5'- aCCUGCGCc---UCGCCUuccagcagcACGGCgAGAa -3'
miRNA:   3'- -GGACGCGauguAGCGGA---------UGCCGgUCU- -5'
24065 3' -56.3 NC_005262.1 + 40520 0.7 0.449982
Target:  5'- aCCUGCGCgacaaguuCAUCGUCgcgGCGGgCGGc -3'
miRNA:   3'- -GGACGCGau------GUAGCGGa--UGCCgGUCu -5'
24065 3' -56.3 NC_005262.1 + 52939 0.7 0.459708
Target:  5'- gCCUGCGCcgccuggGCuUCGCCgGCGGCaAGGu -3'
miRNA:   3'- -GGACGCGa------UGuAGCGGaUGCCGgUCU- -5'
24065 3' -56.3 NC_005262.1 + 29297 0.69 0.489533
Target:  5'- --aGCGCauCcgCGCCgugaACGGCCAGAa -3'
miRNA:   3'- ggaCGCGauGuaGCGGa---UGCCGGUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.