Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24065 | 3' | -56.3 | NC_005262.1 | + | 7355 | 0.75 | 0.236789 |
Target: 5'- gCC-GCGCUuagGCGUCGCCacgACGGUCGGGc -3' miRNA: 3'- -GGaCGCGA---UGUAGCGGa--UGCCGGUCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 11571 | 0.73 | 0.31926 |
Target: 5'- --cGCGCUGCuaUGCCggcgGCGGCCAGc -3' miRNA: 3'- ggaCGCGAUGuaGCGGa---UGCCGGUCu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 62952 | 0.71 | 0.403132 |
Target: 5'- uUUGCGC-GCGUCGCUUcCGGCCGa- -3' miRNA: 3'- gGACGCGaUGUAGCGGAuGCCGGUcu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 28973 | 0.71 | 0.412255 |
Target: 5'- aCCUGCGCc---UCGCCUuccagcagcACGGCgAGAa -3' miRNA: 3'- -GGACGCGauguAGCGGA---------UGCCGgUCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 40520 | 0.7 | 0.449982 |
Target: 5'- aCCUGCGCgacaaguuCAUCGUCgcgGCGGgCGGc -3' miRNA: 3'- -GGACGCGau------GUAGCGGa--UGCCgGUCu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 52939 | 0.7 | 0.459708 |
Target: 5'- gCCUGCGCcgccuggGCuUCGCCgGCGGCaAGGu -3' miRNA: 3'- -GGACGCGa------UGuAGCGGaUGCCGgUCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 29297 | 0.69 | 0.489533 |
Target: 5'- --aGCGCauCcgCGCCgugaACGGCCAGAa -3' miRNA: 3'- ggaCGCGauGuaGCGGa---UGCCGGUCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 42740 | 0.67 | 0.626769 |
Target: 5'- --cGCGCU-CggCGCCUACGGCaCGa- -3' miRNA: 3'- ggaCGCGAuGuaGCGGAUGCCG-GUcu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 32346 | 0.67 | 0.615955 |
Target: 5'- --gGCGUg--AUCGCCUACGGCaCGGc -3' miRNA: 3'- ggaCGCGaugUAGCGGAUGCCG-GUCu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 6112 | 0.69 | 0.530633 |
Target: 5'- gUUGCGgaACggcggcacaGUCGCCUcgaugugcGCGGCCGGGa -3' miRNA: 3'- gGACGCgaUG---------UAGCGGA--------UGCCGGUCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 58619 | 0.69 | 0.521268 |
Target: 5'- -aUGCGCUGCAcCGUCaggcucggcagucgaGCGGCCGGGc -3' miRNA: 3'- ggACGCGAUGUaGCGGa--------------UGCCGGUCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 35103 | 0.69 | 0.520231 |
Target: 5'- gCUGCGUgGCGUCGCCUucccGCuGCCGa- -3' miRNA: 3'- gGACGCGaUGUAGCGGA----UGcCGGUcu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 8155 | 0.69 | 0.499676 |
Target: 5'- uCCUGCGCUACGuggcaaagaUCGCCcuggACaucagcacGCCGGAa -3' miRNA: 3'- -GGACGCGAUGU---------AGCGGa---UGc-------CGGUCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 31625 | 0.69 | 0.489533 |
Target: 5'- aCCUGCGCgGCAagcCGaCCUACGGCg--- -3' miRNA: 3'- -GGACGCGaUGUa--GC-GGAUGCCGgucu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 55384 | 0.67 | 0.6592 |
Target: 5'- aCUGCGCcGCGUacucgucggacaUGCCgaUGCGGCCGa- -3' miRNA: 3'- gGACGCGaUGUA------------GCGG--AUGCCGGUcu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 51369 | 0.67 | 0.6592 |
Target: 5'- -aUGCGCaGCA--GCCgGCGGCCGGu -3' miRNA: 3'- ggACGCGaUGUagCGGaUGCCGGUCu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 50473 | 0.67 | 0.6592 |
Target: 5'- gCC-GCGCgguucGCGUCGCC-ACGGUCGa- -3' miRNA: 3'- -GGaCGCGa----UGUAGCGGaUGCCGGUcu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 59070 | 0.66 | 0.680715 |
Target: 5'- aCgGCGCgggagGCGUgaggcCGCCgGCGGCCGGc -3' miRNA: 3'- gGaCGCGa----UGUA-----GCGGaUGCCGGUCu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 49306 | 0.66 | 0.680715 |
Target: 5'- aCUGCGCgccgcCGagGCCgcccuCGGCCAGc -3' miRNA: 3'- gGACGCGau---GUagCGGau---GCCGGUCu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 50410 | 0.76 | 0.213554 |
Target: 5'- uCCUGCGCgGCGg-GCgCUGCGGCCGGc -3' miRNA: 3'- -GGACGCGaUGUagCG-GAUGCCGGUCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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