miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24065 3' -56.3 NC_005262.1 + 60951 0.7 0.469545
Target:  5'- --cGCGCUuucgccgcGCAUUGCCU-CGGCCAu- -3'
miRNA:   3'- ggaCGCGA--------UGUAGCGGAuGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 46599 0.71 0.430877
Target:  5'- gCUGCGCggGCAggggCGUC-GCGGUCGGAg -3'
miRNA:   3'- gGACGCGa-UGUa---GCGGaUGCCGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 8121 0.71 0.412255
Target:  5'- --cGCGCUGCGUCaGuCCUgacGCGaGCCGGAg -3'
miRNA:   3'- ggaCGCGAUGUAG-C-GGA---UGC-CGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 52509 0.71 0.402227
Target:  5'- aUUGCGCUuugccgcgccuccGCgAUCGCCUccagcgucuCGGCCAGAa -3'
miRNA:   3'- gGACGCGA-------------UG-UAGCGGAu--------GCCGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 16778 0.72 0.359491
Target:  5'- aCCUGCGUgacgaUGCAcuccUCGCCcggcUGCGGCCAc- -3'
miRNA:   3'- -GGACGCG-----AUGU----AGCGG----AUGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 45074 0.72 0.342983
Target:  5'- gCCUGCcgcgcggacuGCUGCAcgucggcccUCGCCUcgGCGGCCAu- -3'
miRNA:   3'- -GGACG----------CGAUGU---------AGCGGA--UGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 56844 0.68 0.600841
Target:  5'- --aGCGCU-CGUCGCCcgacgccagcgcgGCGGCCAu- -3'
miRNA:   3'- ggaCGCGAuGUAGCGGa------------UGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 59904 0.67 0.615955
Target:  5'- aCCUGa--UACGUggCGCCUGCGgGCCGGu -3'
miRNA:   3'- -GGACgcgAUGUA--GCGGAUGC-CGGUCu -5'
24065 3' -56.3 NC_005262.1 + 58099 0.67 0.626769
Target:  5'- gCUGCGCUGUAcUCGCCcUGCuGGCCu-- -3'
miRNA:   3'- gGACGCGAUGU-AGCGG-AUG-CCGGucu -5'
24065 3' -56.3 NC_005262.1 + 49306 0.66 0.680715
Target:  5'- aCUGCGCgccgcCGagGCCgcccuCGGCCAGc -3'
miRNA:   3'- gGACGCGau---GUagCGGau---GCCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 59070 0.66 0.680715
Target:  5'- aCgGCGCgggagGCGUgaggcCGCCgGCGGCCGGc -3'
miRNA:   3'- gGaCGCGa----UGUA-----GCGGaUGCCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 50473 0.67 0.6592
Target:  5'- gCC-GCGCgguucGCGUCGCC-ACGGUCGa- -3'
miRNA:   3'- -GGaCGCGa----UGUAGCGGaUGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 51369 0.67 0.6592
Target:  5'- -aUGCGCaGCA--GCCgGCGGCCGGu -3'
miRNA:   3'- ggACGCGaUGUagCGGaUGCCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 55384 0.67 0.6592
Target:  5'- aCUGCGCcGCGUacucgucggacaUGCCgaUGCGGCCGa- -3'
miRNA:   3'- gGACGCGaUGUA------------GCGG--AUGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 41557 0.67 0.648401
Target:  5'- -gUGCGCcgGCAUCugGgCUGCGGUCAGc -3'
miRNA:   3'- ggACGCGa-UGUAG--CgGAUGCCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 54485 0.67 0.64732
Target:  5'- gCUUGCGCacgACGUUGCCcgacaggUACGcGUCGGAc -3'
miRNA:   3'- -GGACGCGa--UGUAGCGG-------AUGC-CGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 47846 0.67 0.637587
Target:  5'- gCCcGCGCgaugccgGguUCGCC-GCGGCCGGc -3'
miRNA:   3'- -GGaCGCGa------UguAGCGGaUGCCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 6956 0.67 0.637587
Target:  5'- --cGCgGCcgGCAUCGCCgaggacUACGGCCuGAu -3'
miRNA:   3'- ggaCG-CGa-UGUAGCGG------AUGCCGGuCU- -5'
24065 3' -56.3 NC_005262.1 + 49913 0.67 0.637587
Target:  5'- gCCUucgcGCGCUcCAUCGC--GCGGCCGa- -3'
miRNA:   3'- -GGA----CGCGAuGUAGCGgaUGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 22234 0.67 0.626769
Target:  5'- cUCgGCGaUGCGggcaGCCgcgGCGGCCAGAc -3'
miRNA:   3'- -GGaCGCgAUGUag--CGGa--UGCCGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.