miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24065 3' -56.3 NC_005262.1 + 42523 0.73 0.334936
Target:  5'- -aUGCGCUGCuUCGUgaugUUGCGGCCGGc -3'
miRNA:   3'- ggACGCGAUGuAGCG----GAUGCCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 38930 0.69 0.524382
Target:  5'- gCgaGCGCUGCcgUGCCUuccugagcacgcgagACGGUCAGc -3'
miRNA:   3'- -GgaCGCGAUGuaGCGGA---------------UGCCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 6956 0.67 0.637587
Target:  5'- --cGCgGCcgGCAUCGCCgaggacUACGGCCuGAu -3'
miRNA:   3'- ggaCG-CGa-UGUAGCGG------AUGCCGGuCU- -5'
24065 3' -56.3 NC_005262.1 + 8121 0.71 0.412255
Target:  5'- --cGCGCUGCGUCaGuCCUgacGCGaGCCGGAg -3'
miRNA:   3'- ggaCGCGAUGUAG-C-GGA---UGC-CGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 25815 0.74 0.275567
Target:  5'- gCCUGCGCg--AUCGCCU-CGGCCu-- -3'
miRNA:   3'- -GGACGCGaugUAGCGGAuGCCGGucu -5'
24065 3' -56.3 NC_005262.1 + 45074 0.72 0.342983
Target:  5'- gCCUGCcgcgcggacuGCUGCAcgucggcccUCGCCUcgGCGGCCAu- -3'
miRNA:   3'- -GGACG----------CGAUGU---------AGCGGA--UGCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 47846 0.67 0.637587
Target:  5'- gCCcGCGCgaugccgGguUCGCC-GCGGCCGGc -3'
miRNA:   3'- -GGaCGCGa------UguAGCGGaUGCCGGUCu -5'
24065 3' -56.3 NC_005262.1 + 54485 0.67 0.64732
Target:  5'- gCUUGCGCacgACGUUGCCcgacaggUACGcGUCGGAc -3'
miRNA:   3'- -GGACGCGa--UGUAGCGG-------AUGC-CGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 22234 0.67 0.626769
Target:  5'- cUCgGCGaUGCGggcaGCCgcgGCGGCCAGAc -3'
miRNA:   3'- -GGaCGCgAUGUag--CGGa--UGCCGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 24040 0.69 0.499676
Target:  5'- aCUGCGCgccACAcUCGCCgagcuUGGCUGGAc -3'
miRNA:   3'- gGACGCGa--UGU-AGCGGau---GCCGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 40520 0.7 0.449982
Target:  5'- aCCUGCGCgacaaguuCAUCGUCgcgGCGGgCGGc -3'
miRNA:   3'- -GGACGCGau------GUAGCGGa--UGCCgGUCu -5'
24065 3' -56.3 NC_005262.1 + 28578 0.66 0.723125
Target:  5'- --cGCGCgacgGCAUgC-CCUACGGCguGAu -3'
miRNA:   3'- ggaCGCGa---UGUA-GcGGAUGCCGguCU- -5'
24065 3' -56.3 NC_005262.1 + 32346 0.67 0.615955
Target:  5'- --gGCGUg--AUCGCCUACGGCaCGGc -3'
miRNA:   3'- ggaCGCGaugUAGCGGAUGCCG-GUCu -5'
24065 3' -56.3 NC_005262.1 + 6112 0.69 0.530633
Target:  5'- gUUGCGgaACggcggcacaGUCGCCUcgaugugcGCGGCCGGGa -3'
miRNA:   3'- gGACGCgaUG---------UAGCGGA--------UGCCGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 58619 0.69 0.521268
Target:  5'- -aUGCGCUGCAcCGUCaggcucggcagucgaGCGGCCGGGc -3'
miRNA:   3'- ggACGCGAUGUaGCGGa--------------UGCCGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 28343 0.66 0.702052
Target:  5'- cCCgUGCGCgUGCAgCGCCUcaAgGGCCGc- -3'
miRNA:   3'- -GG-ACGCG-AUGUaGCGGA--UgCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 50170 0.66 0.712627
Target:  5'- gCCUGCGCUaccugacgaaGCAg-GCCaagcucaacgGCGGCUGGAc -3'
miRNA:   3'- -GGACGCGA----------UGUagCGGa---------UGCCGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 61473 0.66 0.712627
Target:  5'- --aGCGCUagacgACAucuUCGC--GCGGCCGGAa -3'
miRNA:   3'- ggaCGCGA-----UGU---AGCGgaUGCCGGUCU- -5'
24065 3' -56.3 NC_005262.1 + 63327 0.66 0.712627
Target:  5'- --cGCGCcGCGUCGCCga-GGUCAa- -3'
miRNA:   3'- ggaCGCGaUGUAGCGGaugCCGGUcu -5'
24065 3' -56.3 NC_005262.1 + 12950 0.66 0.723125
Target:  5'- gCgUGCGCgacgGCAUCGCCgaccgcuCGGCg--- -3'
miRNA:   3'- -GgACGCGa---UGUAGCGGau-----GCCGgucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.