Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24065 | 3' | -56.3 | NC_005262.1 | + | 8155 | 0.69 | 0.499676 |
Target: 5'- uCCUGCGCUACGuggcaaagaUCGCCcuggACaucagcacGCCGGAa -3' miRNA: 3'- -GGACGCGAUGU---------AGCGGa---UGc-------CGGUCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 31625 | 0.69 | 0.489533 |
Target: 5'- aCCUGCGCgGCAagcCGaCCUACGGCg--- -3' miRNA: 3'- -GGACGCGaUGUa--GC-GGAUGCCGgucu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 29297 | 0.69 | 0.489533 |
Target: 5'- --aGCGCauCcgCGCCgugaACGGCCAGAa -3' miRNA: 3'- ggaCGCGauGuaGCGGa---UGCCGGUCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 40520 | 0.7 | 0.449982 |
Target: 5'- aCCUGCGCgacaaguuCAUCGUCgcgGCGGgCGGc -3' miRNA: 3'- -GGACGCGau------GUAGCGGa--UGCCgGUCu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 28973 | 0.71 | 0.412255 |
Target: 5'- aCCUGCGCc---UCGCCUuccagcagcACGGCgAGAa -3' miRNA: 3'- -GGACGCGauguAGCGGA---------UGCCGgUCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 62952 | 0.71 | 0.403132 |
Target: 5'- uUUGCGC-GCGUCGCUUcCGGCCGa- -3' miRNA: 3'- gGACGCGaUGUAGCGGAuGCCGGUcu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 11651 | 0.67 | 0.626769 |
Target: 5'- --gGCGCcgGCGUCGCgCUGCacgcuGGCCGGc -3' miRNA: 3'- ggaCGCGa-UGUAGCG-GAUG-----CCGGUCu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 56773 | 0.67 | 0.637587 |
Target: 5'- aCgaGCGCUACAUgaaGCUggcCGGCCuGAa -3' miRNA: 3'- -GgaCGCGAUGUAg--CGGau-GCCGGuCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 30770 | 0.66 | 0.723125 |
Target: 5'- -aUGC-CUACcUCGCCUcgcGCGGCUaaGGAg -3' miRNA: 3'- ggACGcGAUGuAGCGGA---UGCCGG--UCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 2655 | 0.66 | 0.723125 |
Target: 5'- gCCUGCGCgg---CGCCggGCGGCg--- -3' miRNA: 3'- -GGACGCGauguaGCGGa-UGCCGgucu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 28578 | 0.66 | 0.723125 |
Target: 5'- --cGCGCgacgGCAUgC-CCUACGGCguGAu -3' miRNA: 3'- ggaCGCGa---UGUA-GcGGAUGCCGguCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 12950 | 0.66 | 0.723125 |
Target: 5'- gCgUGCGCgacgGCAUCGCCgaccgcuCGGCg--- -3' miRNA: 3'- -GgACGCGa---UGUAGCGGau-----GCCGgucu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 63327 | 0.66 | 0.712627 |
Target: 5'- --cGCGCcGCGUCGCCga-GGUCAa- -3' miRNA: 3'- ggaCGCGaUGUAGCGGaugCCGGUcu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 61473 | 0.66 | 0.712627 |
Target: 5'- --aGCGCUagacgACAucuUCGC--GCGGCCGGAa -3' miRNA: 3'- ggaCGCGA-----UGU---AGCGgaUGCCGGUCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 50170 | 0.66 | 0.712627 |
Target: 5'- gCCUGCGCUaccugacgaaGCAg-GCCaagcucaacgGCGGCUGGAc -3' miRNA: 3'- -GGACGCGA----------UGUagCGGa---------UGCCGGUCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 28343 | 0.66 | 0.702052 |
Target: 5'- cCCgUGCGCgUGCAgCGCCUcaAgGGCCGc- -3' miRNA: 3'- -GG-ACGCG-AUGUaGCGGA--UgCCGGUcu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 8283 | 0.66 | 0.680715 |
Target: 5'- gCUGC-CcGCGUCGCUcgcgagGCGGCCAaGAa -3' miRNA: 3'- gGACGcGaUGUAGCGGa-----UGCCGGU-CU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 2823 | 0.66 | 0.680715 |
Target: 5'- aCCUGCGCcucgACcUCGUUUGCGcGCUGGc -3' miRNA: 3'- -GGACGCGa---UGuAGCGGAUGC-CGGUCu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 16050 | 0.67 | 0.6592 |
Target: 5'- aCC-GcCGCUACcgCGaCUUGCGGCCGa- -3' miRNA: 3'- -GGaC-GCGAUGuaGC-GGAUGCCGGUcu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 58904 | 0.67 | 0.637587 |
Target: 5'- gCUGCGCgauCAg-GCCgGCGGCCcGAc -3' miRNA: 3'- gGACGCGau-GUagCGGaUGCCGGuCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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