Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24065 | 3' | -56.3 | NC_005262.1 | + | 16050 | 0.67 | 0.6592 |
Target: 5'- aCC-GcCGCUACcgCGaCUUGCGGCCGa- -3' miRNA: 3'- -GGaC-GCGAUGuaGC-GGAUGCCGGUcu -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 58904 | 0.67 | 0.637587 |
Target: 5'- gCUGCGCgauCAg-GCCgGCGGCCcGAc -3' miRNA: 3'- gGACGCGau-GUagCGGaUGCCGGuCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 56773 | 0.67 | 0.637587 |
Target: 5'- aCgaGCGCUACAUgaaGCUggcCGGCCuGAa -3' miRNA: 3'- -GgaCGCGAUGUAg--CGGau-GCCGGuCU- -5' |
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24065 | 3' | -56.3 | NC_005262.1 | + | 48312 | 1.11 | 0.000732 |
Target: 5'- gCCUGCGCUACAUCGCCUACGGCCAGAa -3' miRNA: 3'- -GGACGCGAUGUAGCGGAUGCCGGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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