miRNA display CGI


Results 1 - 20 of 156 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24065 5' -61.8 NC_005262.1 + 26544 0.66 0.466357
Target:  5'- cGGCcacuccgaaGCGGCCGACgCGcugcgccaguucGCGCaggcauacGCUGGCg -3'
miRNA:   3'- -CCG---------UGCUGGCUGgGC------------CGCGa-------CGACCG- -5'
24065 5' -61.8 NC_005262.1 + 60735 0.66 0.466357
Target:  5'- aGG-ACcGCUGGCUCGGCGaagGCUGGg -3'
miRNA:   3'- -CCgUGcUGGCUGGGCCGCga-CGACCg -5'
24065 5' -61.8 NC_005262.1 + 49248 0.66 0.466357
Target:  5'- cGCuGCGGCCGAUgCGGC-CUGCacGCc -3'
miRNA:   3'- cCG-UGCUGGCUGgGCCGcGACGacCG- -5'
24065 5' -61.8 NC_005262.1 + 13465 0.66 0.466357
Target:  5'- uGCGCG-C--GCCCaGGCGCaggauuccgUGCUGGCg -3'
miRNA:   3'- cCGUGCuGgcUGGG-CCGCG---------ACGACCG- -5'
24065 5' -61.8 NC_005262.1 + 12890 0.66 0.466357
Target:  5'- cGCuCGugCGcaucagcCCCGGC-CUGCUGGa -3'
miRNA:   3'- cCGuGCugGCu------GGGCCGcGACGACCg -5'
24065 5' -61.8 NC_005262.1 + 44871 0.66 0.466357
Target:  5'- aGCucguCGAgcUCGGCCUGccGCGC-GCUGGCg -3'
miRNA:   3'- cCGu---GCU--GGCUGGGC--CGCGaCGACCG- -5'
24065 5' -61.8 NC_005262.1 + 50017 0.66 0.465414
Target:  5'- cGGCGCccaccgaagugaaGcCCGAgCCGGCGCcgGCUG-Cu -3'
miRNA:   3'- -CCGUG-------------CuGGCUgGGCCGCGa-CGACcG- -5'
24065 5' -61.8 NC_005262.1 + 58658 0.66 0.46071
Target:  5'- cGCGCGAguucuacgaucaagcCCGAgCCCGcguugcgaGCGCgcaacaaGCUGGCg -3'
miRNA:   3'- cCGUGCU---------------GGCU-GGGC--------CGCGa------CGACCG- -5'
24065 5' -61.8 NC_005262.1 + 57340 0.66 0.4579
Target:  5'- gGGCGCG-CCGuuCCCGGaacagGCUGagcuccuggacaagaUGGCg -3'
miRNA:   3'- -CCGUGCuGGCu-GGGCCg----CGACg--------------ACCG- -5'
24065 5' -61.8 NC_005262.1 + 11074 0.66 0.456965
Target:  5'- aGCcCGAgCGGCCaaagGGCgGCccGCUGGCa -3'
miRNA:   3'- cCGuGCUgGCUGGg---CCG-CGa-CGACCG- -5'
24065 5' -61.8 NC_005262.1 + 51738 0.66 0.456965
Target:  5'- aGCugauCGACCaGCUCGGCaa-GCUGGCu -3'
miRNA:   3'- cCGu---GCUGGcUGGGCCGcgaCGACCG- -5'
24065 5' -61.8 NC_005262.1 + 53793 0.66 0.456965
Target:  5'- cGGCcuuCGACgCGGCCgGGUuCUGCgcgcccGGCu -3'
miRNA:   3'- -CCGu--GCUG-GCUGGgCCGcGACGa-----CCG- -5'
24065 5' -61.8 NC_005262.1 + 49920 0.66 0.454167
Target:  5'- gGGCagcaguaccgccugACGACCGGCCCGGa-----UGGCg -3'
miRNA:   3'- -CCG--------------UGCUGGCUGGGCCgcgacgACCG- -5'
24065 5' -61.8 NC_005262.1 + 54442 0.66 0.453237
Target:  5'- cGCGCGcGCCGACCggaaguaUcagcgcaacgucgaGGCGCUGCUcGCg -3'
miRNA:   3'- cCGUGC-UGGCUGG-------G--------------CCGCGACGAcCG- -5'
24065 5' -61.8 NC_005262.1 + 48383 0.66 0.451379
Target:  5'- aGCGCaGGCCGGCCUcgaGGUuguuccaagcaucgcGCUGCccGGCa -3'
miRNA:   3'- cCGUG-CUGGCUGGG---CCG---------------CGACGa-CCG- -5'
24065 5' -61.8 NC_005262.1 + 13132 0.66 0.447675
Target:  5'- uGGCACaauuagguCCG-CCgCGcGCGCUGCgcGGCa -3'
miRNA:   3'- -CCGUGcu------GGCuGG-GC-CGCGACGa-CCG- -5'
24065 5' -61.8 NC_005262.1 + 43058 0.66 0.447675
Target:  5'- ---cCGGCCGGCaCCGcGCGCcGC-GGCa -3'
miRNA:   3'- ccguGCUGGCUG-GGC-CGCGaCGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 43344 0.66 0.447675
Target:  5'- aGGCgGCGAUCGACgCGGCGaa---GGCg -3'
miRNA:   3'- -CCG-UGCUGGCUGgGCCGCgacgaCCG- -5'
24065 5' -61.8 NC_005262.1 + 48487 0.66 0.447675
Target:  5'- gGGCACGGgCGGCgcgaCGGCaGCcGCaGGUa -3'
miRNA:   3'- -CCGUGCUgGCUGg---GCCG-CGaCGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 11720 0.66 0.447675
Target:  5'- cGGCGCcGCCGAgCCgauGGUGCaGggGGCa -3'
miRNA:   3'- -CCGUGcUGGCUgGG---CCGCGaCgaCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.