miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24065 5' -61.8 NC_005262.1 + 47743 0.66 0.420452
Target:  5'- uGGUGCGccGCCGGCCgCGGCGaacCcGGCa -3'
miRNA:   3'- -CCGUGC--UGGCUGG-GCCGCgacGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 51268 0.66 0.411603
Target:  5'- cGGCAa-GCUGAaccucaCCGGCcgccgGCUGCUGcGCa -3'
miRNA:   3'- -CCGUgcUGGCUg-----GGCCG-----CGACGAC-CG- -5'
24065 5' -61.8 NC_005262.1 + 25438 0.66 0.411603
Target:  5'- cGCcuACGACaaccuGCCCgaGGCGCUGCgcgaGGCg -3'
miRNA:   3'- cCG--UGCUGgc---UGGG--CCGCGACGa---CCG- -5'
24065 5' -61.8 NC_005262.1 + 60837 0.66 0.438491
Target:  5'- cGGCcuacGCGAUCGGCgUGGCGaugGCcgaGGCa -3'
miRNA:   3'- -CCG----UGCUGGCUGgGCCGCga-CGa--CCG- -5'
24065 5' -61.8 NC_005262.1 + 40752 0.66 0.420452
Target:  5'- cGGCGCGuuCCaaaucaaCGGCuaUGCUGGCg -3'
miRNA:   3'- -CCGUGCu-GGcugg---GCCGcgACGACCG- -5'
24065 5' -61.8 NC_005262.1 + 61778 0.66 0.420452
Target:  5'- cGCGcCGACCGACCa-GCGCguuuucgccUGCgcGGCg -3'
miRNA:   3'- cCGU-GCUGGCUGGgcCGCG---------ACGa-CCG- -5'
24065 5' -61.8 NC_005262.1 + 54442 0.66 0.453237
Target:  5'- cGCGCGcGCCGACCggaaguaUcagcgcaacgucgaGGCGCUGCUcGCg -3'
miRNA:   3'- cCGUGC-UGGCUGG-------G--------------CCGCGACGAcCG- -5'
24065 5' -61.8 NC_005262.1 + 43058 0.66 0.447675
Target:  5'- ---cCGGCCGGCaCCGcGCGCcGC-GGCa -3'
miRNA:   3'- ccguGCUGGCUG-GGC-CGCGaCGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 61705 0.66 0.420452
Target:  5'- gGGCGCG-CCGgguucGCUCGGCGC-GCUcuGCu -3'
miRNA:   3'- -CCGUGCuGGC-----UGGGCCGCGaCGAc-CG- -5'
24065 5' -61.8 NC_005262.1 + 30051 0.66 0.419563
Target:  5'- gGGCAaGACCGACgaugcugCCGGCGaCgacgacGCcGGCa -3'
miRNA:   3'- -CCGUgCUGGCUG-------GGCCGC-Ga-----CGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 11988 0.66 0.429416
Target:  5'- aGCACGACCaGCUaCGGCGUggacacguuUGCacGGCg -3'
miRNA:   3'- cCGUGCUGGcUGG-GCCGCG---------ACGa-CCG- -5'
24065 5' -61.8 NC_005262.1 + 48487 0.66 0.447675
Target:  5'- gGGCACGGgCGGCgcgaCGGCaGCcGCaGGUa -3'
miRNA:   3'- -CCGUGCUgGCUGg---GCCG-CGaCGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 43344 0.66 0.447675
Target:  5'- aGGCgGCGAUCGACgCGGCGaa---GGCg -3'
miRNA:   3'- -CCG-UGCUGGCUGgGCCGCgacgaCCG- -5'
24065 5' -61.8 NC_005262.1 + 13132 0.66 0.447675
Target:  5'- uGGCACaauuagguCCG-CCgCGcGCGCUGCgcGGCa -3'
miRNA:   3'- -CCGUGcu------GGCuGG-GC-CGCGACGa-CCG- -5'
24065 5' -61.8 NC_005262.1 + 51738 0.66 0.456965
Target:  5'- aGCugauCGACCaGCUCGGCaa-GCUGGCu -3'
miRNA:   3'- cCGu---GCUGGcUGGGCCGcgaCGACCG- -5'
24065 5' -61.8 NC_005262.1 + 62903 0.66 0.419563
Target:  5'- aGCGCG-CCGACgagCUGGCGC-GCaaucucaUGGCa -3'
miRNA:   3'- cCGUGCuGGCUG---GGCCGCGaCG-------ACCG- -5'
24065 5' -61.8 NC_005262.1 + 49920 0.66 0.454167
Target:  5'- gGGCagcaguaccgccugACGACCGGCCCGGa-----UGGCg -3'
miRNA:   3'- -CCG--------------UGCUGGCUGGGCCgcgacgACCG- -5'
24065 5' -61.8 NC_005262.1 + 15143 0.66 0.429416
Target:  5'- -uCGCGGCCGGCgucgagUCGGCGCggaUGUUGGa -3'
miRNA:   3'- ccGUGCUGGCUG------GGCCGCG---ACGACCg -5'
24065 5' -61.8 NC_005262.1 + 31054 0.66 0.438491
Target:  5'- uGGUGCuGACCGACgCCGacGCGCUcGCcgaccugaagGGCg -3'
miRNA:   3'- -CCGUG-CUGGCUG-GGC--CGCGA-CGa---------CCG- -5'
24065 5' -61.8 NC_005262.1 + 35693 0.66 0.420452
Target:  5'- gGGCACGGaagcauCCGcUCCGGCGUcgGCgggacGGCc -3'
miRNA:   3'- -CCGUGCU------GGCuGGGCCGCGa-CGa----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.