Results 21 - 40 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24065 | 5' | -61.8 | NC_005262.1 | + | 53793 | 0.66 | 0.456965 |
Target: 5'- cGGCcuuCGACgCGGCCgGGUuCUGCgcgcccGGCu -3' miRNA: 3'- -CCGu--GCUG-GCUGGgCCGcGACGa-----CCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 24536 | 0.66 | 0.447675 |
Target: 5'- aGCGCcAUCGAUCgGGCGUgacgGCUcaGGCg -3' miRNA: 3'- cCGUGcUGGCUGGgCCGCGa---CGA--CCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 11720 | 0.66 | 0.447675 |
Target: 5'- cGGCGCcGCCGAgCCgauGGUGCaGggGGCa -3' miRNA: 3'- -CCGUGcUGGCUgGG---CCGCGaCgaCCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 50017 | 0.66 | 0.465414 |
Target: 5'- cGGCGCccaccgaagugaaGcCCGAgCCGGCGCcgGCUG-Cu -3' miRNA: 3'- -CCGUG-------------CuGGCUgGGCCGCGa-CGACcG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 26544 | 0.66 | 0.466357 |
Target: 5'- cGGCcacuccgaaGCGGCCGACgCGcugcgccaguucGCGCaggcauacGCUGGCg -3' miRNA: 3'- -CCG---------UGCUGGCUGgGC------------CGCGa-------CGACCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 23616 | 0.66 | 0.438491 |
Target: 5'- uGCGCGGuCCu-CCCGcGCuuccucCUGCUGGCg -3' miRNA: 3'- cCGUGCU-GGcuGGGC-CGc-----GACGACCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 43914 | 0.66 | 0.438491 |
Target: 5'- cGCGCGGCCGGCCCGcggccGUGUcGCc-GCg -3' miRNA: 3'- cCGUGCUGGCUGGGC-----CGCGaCGacCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 58658 | 0.66 | 0.46071 |
Target: 5'- cGCGCGAguucuacgaucaagcCCGAgCCCGcguugcgaGCGCgcaacaaGCUGGCg -3' miRNA: 3'- cCGUGCU---------------GGCU-GGGC--------CGCGa------CGACCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 48487 | 0.66 | 0.447675 |
Target: 5'- gGGCACGGgCGGCgcgaCGGCaGCcGCaGGUa -3' miRNA: 3'- -CCGUGCUgGCUGg---GCCG-CGaCGaCCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 11074 | 0.66 | 0.456965 |
Target: 5'- aGCcCGAgCGGCCaaagGGCgGCccGCUGGCa -3' miRNA: 3'- cCGuGCUgGCUGGg---CCG-CGa-CGACCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 49248 | 0.66 | 0.466357 |
Target: 5'- cGCuGCGGCCGAUgCGGC-CUGCacGCc -3' miRNA: 3'- cCG-UGCUGGCUGgGCCGcGACGacCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 32968 | 0.66 | 0.438491 |
Target: 5'- uGGC-CGACguuCGACgCGGCGaacGCUcGGCg -3' miRNA: 3'- -CCGuGCUG---GCUGgGCCGCga-CGA-CCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 50081 | 0.66 | 0.447675 |
Target: 5'- cGGCGCGGCUucaucggcggGAgCgGGCGCcGCUgucucgucGGCg -3' miRNA: 3'- -CCGUGCUGG----------CUgGgCCGCGaCGA--------CCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 44871 | 0.66 | 0.466357 |
Target: 5'- aGCucguCGAgcUCGGCCUGccGCGC-GCUGGCg -3' miRNA: 3'- cCGu---GCU--GGCUGGGC--CGCGaCGACCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 12890 | 0.66 | 0.466357 |
Target: 5'- cGCuCGugCGcaucagcCCCGGC-CUGCUGGa -3' miRNA: 3'- cCGuGCugGCu------GGGCCGcGACGACCg -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 48383 | 0.66 | 0.451379 |
Target: 5'- aGCGCaGGCCGGCCUcgaGGUuguuccaagcaucgcGCUGCccGGCa -3' miRNA: 3'- cCGUG-CUGGCUGGG---CCG---------------CGACGa-CCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 13465 | 0.66 | 0.466357 |
Target: 5'- uGCGCG-C--GCCCaGGCGCaggauuccgUGCUGGCg -3' miRNA: 3'- cCGUGCuGgcUGGG-CCGCG---------ACGACCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 25020 | 0.66 | 0.442152 |
Target: 5'- cGCGCGGCCauGugcgcaucccgccauGCCuCGGCGUccuccgGCUGGCc -3' miRNA: 3'- cCGUGCUGG--C---------------UGG-GCCGCGa-----CGACCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 10865 | 0.66 | 0.438491 |
Target: 5'- aGCAguACCGcgcGCCCGGCGCg---GGCg -3' miRNA: 3'- cCGUgcUGGC---UGGGCCGCGacgaCCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 15143 | 0.66 | 0.429416 |
Target: 5'- -uCGCGGCCGGCgucgagUCGGCGCggaUGUUGGa -3' miRNA: 3'- ccGUGCUGGCUG------GGCCGCG---ACGACCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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