miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24065 5' -61.8 NC_005262.1 + 40752 0.66 0.420452
Target:  5'- cGGCGCGuuCCaaaucaaCGGCuaUGCUGGCg -3'
miRNA:   3'- -CCGUGCu-GGcugg---GCCGcgACGACCG- -5'
24065 5' -61.8 NC_005262.1 + 43058 0.66 0.447675
Target:  5'- ---cCGGCCGGCaCCGcGCGCcGC-GGCa -3'
miRNA:   3'- ccguGCUGGCUG-GGC-CGCGaCGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 60837 0.66 0.438491
Target:  5'- cGGCcuacGCGAUCGGCgUGGCGaugGCcgaGGCa -3'
miRNA:   3'- -CCG----UGCUGGCUGgGCCGCga-CGa--CCG- -5'
24065 5' -61.8 NC_005262.1 + 31054 0.66 0.438491
Target:  5'- uGGUGCuGACCGACgCCGacGCGCUcGCcgaccugaagGGCg -3'
miRNA:   3'- -CCGUG-CUGGCUG-GGC--CGCGA-CGa---------CCG- -5'
24065 5' -61.8 NC_005262.1 + 12319 0.67 0.377387
Target:  5'- cGGCauGCGGCuCGugCCGcaGCGCgcgGC-GGCa -3'
miRNA:   3'- -CCG--UGCUG-GCugGGC--CGCGa--CGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 25247 0.67 0.377387
Target:  5'- cGCGCGcaacGCCGGCuCCuGCGCcGCcucUGGCa -3'
miRNA:   3'- cCGUGC----UGGCUG-GGcCGCGaCG---ACCG- -5'
24065 5' -61.8 NC_005262.1 + 9501 0.67 0.380721
Target:  5'- uGGUGCGAUuugCGGCCCGaccgcuuuucaauauGCGCgGCgGGCu -3'
miRNA:   3'- -CCGUGCUG---GCUGGGC---------------CGCGaCGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 27164 0.67 0.38576
Target:  5'- cGGCAC-ACCGGCCgcauggugUGGUGCcgUGCUGuGUg -3'
miRNA:   3'- -CCGUGcUGGCUGG--------GCCGCG--ACGAC-CG- -5'
24065 5' -61.8 NC_005262.1 + 56945 0.67 0.394255
Target:  5'- cGCACG-CCGAUCC-GCGCggGCgaguucgcgGGCg -3'
miRNA:   3'- cCGUGCuGGCUGGGcCGCGa-CGa--------CCG- -5'
24065 5' -61.8 NC_005262.1 + 60202 0.67 0.394255
Target:  5'- cGGCAaggagcCGGCCGGCgaggUCGGCaaGCUGCUGa- -3'
miRNA:   3'- -CCGU------GCUGGCUG----GGCCG--CGACGACcg -5'
24065 5' -61.8 NC_005262.1 + 11634 0.67 0.402869
Target:  5'- uGCACcAUCGGCUCGGCGgC-GCcGGCg -3'
miRNA:   3'- cCGUGcUGGCUGGGCCGC-GaCGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 63155 0.67 0.369137
Target:  5'- cGGCAa-ACCGAaCaaGCGCUGCUGGg -3'
miRNA:   3'- -CCGUgcUGGCUgGgcCGCGACGACCg -5'
24065 5' -61.8 NC_005262.1 + 29932 0.67 0.369137
Target:  5'- cGGCGauagcUGAaggaCGACCCGGaCGCggGCggcGGCg -3'
miRNA:   3'- -CCGU-----GCUg---GCUGGGCC-GCGa-CGa--CCG- -5'
24065 5' -61.8 NC_005262.1 + 60147 0.67 0.369137
Target:  5'- aGGCAUGGgCGAaguaCCCGGCcGCcGUgaaGGCg -3'
miRNA:   3'- -CCGUGCUgGCU----GGGCCG-CGaCGa--CCG- -5'
24065 5' -61.8 NC_005262.1 + 44396 0.67 0.369137
Target:  5'- aGGCGCGAgggauaCC-ACCCGcGCGCcGCacacgaUGGCg -3'
miRNA:   3'- -CCGUGCU------GGcUGGGC-CGCGaCG------ACCG- -5'
24065 5' -61.8 NC_005262.1 + 58505 0.67 0.360206
Target:  5'- cGGCGaaccugaaccaguCGACCGcccuGCCCGuGCuGCUGCacgaGGCg -3'
miRNA:   3'- -CCGU-------------GCUGGC----UGGGC-CG-CGACGa---CCG- -5'
24065 5' -61.8 NC_005262.1 + 63270 0.67 0.360206
Target:  5'- uGGCA--GCCGccGCCugcuugaCGGCcgGCUGCUGGCu -3'
miRNA:   3'- -CCGUgcUGGC--UGG-------GCCG--CGACGACCG- -5'
24065 5' -61.8 NC_005262.1 + 46736 0.67 0.358598
Target:  5'- cGGCACGACCGgaucgaucgccgccACgCCGGuCGUacagGC-GGCg -3'
miRNA:   3'- -CCGUGCUGGC--------------UG-GGCC-GCGa---CGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 33945 0.67 0.357796
Target:  5'- gGGCACGcggcaAgCGAuCCCGGaacgcggcgucgaGCUGCUGGa -3'
miRNA:   3'- -CCGUGC-----UgGCU-GGGCCg------------CGACGACCg -5'
24065 5' -61.8 NC_005262.1 + 13555 0.67 0.402869
Target:  5'- aGGcCGCGACCGuuGCuuGGCauccGCUcgGCUGGa -3'
miRNA:   3'- -CC-GUGCUGGC--UGggCCG----CGA--CGACCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.