Results 21 - 40 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24065 | 5' | -61.8 | NC_005262.1 | + | 1053 | 0.73 | 0.158298 |
Target: 5'- aGGCGCGAUCGGCCCGGagccgacaaagaagaGCUGCc--- -3' miRNA: 3'- -CCGUGCUGGCUGGGCCg--------------CGACGaccg -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 57619 | 0.73 | 0.16581 |
Target: 5'- cGGUACGACCuGaucgcggucgauGCCCGGCGCgacGCUgaacuucGGCg -3' miRNA: 3'- -CCGUGCUGG-C------------UGGGCCGCGa--CGA-------CCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 17740 | 0.72 | 0.195163 |
Target: 5'- cGGCGCG-CUGgcgggcgaucucuGCCUGcugcucggcgagcucGCGCUGCUGGCg -3' miRNA: 3'- -CCGUGCuGGC-------------UGGGC---------------CGCGACGACCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 2748 | 0.72 | 0.188854 |
Target: 5'- cGGCcaggACG-CCG-CCCGGCGCcGCgcaGGCa -3' miRNA: 3'- -CCG----UGCuGGCuGGGCCGCGaCGa--CCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 43617 | 0.72 | 0.198636 |
Target: 5'- aGGUgACGcucGCCGGCaCCGGCGCagaaCUGGCa -3' miRNA: 3'- -CCG-UGC---UGGCUG-GGCCGCGac--GACCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 51466 | 0.72 | 0.179499 |
Target: 5'- aGGCGCGGCCuuGgCCGGCGUcGCggacGGCg -3' miRNA: 3'- -CCGUGCUGGc-UgGGCCGCGaCGa---CCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 11520 | 0.72 | 0.187424 |
Target: 5'- gGGCGCGGCgugucgcgcaccuuCGgcgGCCCGGCGCgGCgcGGCu -3' miRNA: 3'- -CCGUGCUG--------------GC---UGGGCCGCGaCGa-CCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 9226 | 0.72 | 0.184124 |
Target: 5'- cGCAuucCGACCGGCCCGGCGCc---GGUc -3' miRNA: 3'- cCGU---GCUGGCUGGGCCGCGacgaCCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 46541 | 0.72 | 0.170557 |
Target: 5'- cGGCGCGGCauucgGGUCCGGCGCggGC-GGCg -3' miRNA: 3'- -CCGUGCUGg----CUGGGCCGCGa-CGaCCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 43838 | 0.72 | 0.170557 |
Target: 5'- gGGC-CGGCCGcGCgCGGCGgUGCgccGGCa -3' miRNA: 3'- -CCGuGCUGGC-UGgGCCGCgACGa--CCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 57667 | 0.72 | 0.174977 |
Target: 5'- cGGCACGAUCGACUucuCGcGCGCcggGCgcGGCa -3' miRNA: 3'- -CCGUGCUGGCUGG---GC-CGCGa--CGa-CCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 49830 | 0.72 | 0.184124 |
Target: 5'- gGGCGCcGCCGGCgUCGGUGCgGCUucGGCc -3' miRNA: 3'- -CCGUGcUGGCUG-GGCCGCGaCGA--CCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 34633 | 0.72 | 0.193691 |
Target: 5'- cGGCAaGAagcUCGACCCGGCGUcGCucgacUGGCu -3' miRNA: 3'- -CCGUgCU---GGCUGGGCCGCGaCG-----ACCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 9140 | 0.72 | 0.190776 |
Target: 5'- cGGCGCcgGGCCGgucggaaugcggaucACCCGGCGCcuucacGCaUGGCg -3' miRNA: 3'- -CCGUG--CUGGC---------------UGGGCCGCGa-----CG-ACCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 34755 | 0.72 | 0.188377 |
Target: 5'- uGCGCG-UCGugCCGGCGCcGCUcgagcucGGCg -3' miRNA: 3'- cCGUGCuGGCugGGCCGCGaCGA-------CCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 6051 | 0.72 | 0.179499 |
Target: 5'- cGGCACGAuaCCGcACCaCGGgGUUGCgucaGGCc -3' miRNA: 3'- -CCGUGCU--GGC-UGG-GCCgCGACGa---CCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 13467 | 0.71 | 0.216278 |
Target: 5'- gGGCGCGAa--GCCCGcGCGCgucgcgcgcuacucGCUGGCg -3' miRNA: 3'- -CCGUGCUggcUGGGC-CGCGa-------------CGACCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 53819 | 0.71 | 0.230661 |
Target: 5'- cGGCACGggcaucgaGCUGACgcaCCGGCGCgGCgcggacGGCa -3' miRNA: 3'- -CCGUGC--------UGGCUG---GGCCGCGaCGa-----CCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 52701 | 0.71 | 0.219528 |
Target: 5'- aGGCcgcCGGCCGACgCCGgacgaggccGCGCUGCUGa- -3' miRNA: 3'- -CCGu--GCUGGCUG-GGC---------CGCGACGACcg -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 11769 | 0.71 | 0.210954 |
Target: 5'- uGGCGCGGcCCGACCUGgGCGC-GCUccucuacccucacaaGGUg -3' miRNA: 3'- -CCGUGCU-GGCUGGGC-CGCGaCGA---------------CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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