miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24065 5' -61.8 NC_005262.1 + 48346 1.13 0.000154
Target:  5'- cGGCACGACCGACCCGGCGCUGCUGGCg -3'
miRNA:   3'- -CCGUGCUGGCUGGGCCGCGACGACCG- -5'
24065 5' -61.8 NC_005262.1 + 42237 0.8 0.052695
Target:  5'- cGGcCGCGACCgGGCCCGGCGCcGCguagaccGGCu -3'
miRNA:   3'- -CC-GUGCUGG-CUGGGCCGCGaCGa------CCG- -5'
24065 5' -61.8 NC_005262.1 + 47800 0.78 0.06738
Target:  5'- aGGCgGCGAgCCGccGCCCGGCGCggUGCUuGGCg -3'
miRNA:   3'- -CCG-UGCU-GGC--UGGGCCGCG--ACGA-CCG- -5'
24065 5' -61.8 NC_005262.1 + 24331 0.77 0.081456
Target:  5'- cGGCGCGAUCGACaugCGGCuCUGCgucGGCg -3'
miRNA:   3'- -CCGUGCUGGCUGg--GCCGcGACGa--CCG- -5'
24065 5' -61.8 NC_005262.1 + 5081 0.76 0.090719
Target:  5'- cGGCgcguGCGACCGGCUCGGCGgUGCgcgcccGGUu -3'
miRNA:   3'- -CCG----UGCUGGCUGGGCCGCgACGa-----CCG- -5'
24065 5' -61.8 NC_005262.1 + 54343 0.76 0.090719
Target:  5'- cGGCAccuCGAUCuacgagGACCCGGCGaaggGCUGGCa -3'
miRNA:   3'- -CCGU---GCUGG------CUGGGCCGCga--CGACCG- -5'
24065 5' -61.8 NC_005262.1 + 10615 0.76 0.093186
Target:  5'- cGGCAuagccguuuCGGCCGccCCCGcGCuGCUGCUGGCc -3'
miRNA:   3'- -CCGU---------GCUGGCu-GGGC-CG-CGACGACCG- -5'
24065 5' -61.8 NC_005262.1 + 16975 0.76 0.095717
Target:  5'- cGGUGCggugugGugCGGCCCGGCGCgcgGCcgGGCg -3'
miRNA:   3'- -CCGUG------CugGCUGGGCCGCGa--CGa-CCG- -5'
24065 5' -61.8 NC_005262.1 + 49840 0.75 0.11232
Target:  5'- cGCGCGAauGGCCCGGUGCcgGC-GGCg -3'
miRNA:   3'- cCGUGCUggCUGGGCCGCGa-CGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 60556 0.75 0.118429
Target:  5'- gGGCACG-CUGACgCCGGCGCU-C-GGCg -3'
miRNA:   3'- -CCGUGCuGGCUG-GGCCGCGAcGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 35092 0.74 0.124847
Target:  5'- uGGUACgGACgGGCCC-GCGCUGCUgcccGGCu -3'
miRNA:   3'- -CCGUG-CUGgCUGGGcCGCGACGA----CCG- -5'
24065 5' -61.8 NC_005262.1 + 48139 0.74 0.127839
Target:  5'- aGGUGCGACCGACgcgcuugCgGGCGCgGCcGGCu -3'
miRNA:   3'- -CCGUGCUGGCUG-------GgCCGCGaCGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 59461 0.74 0.128175
Target:  5'- uGCGCGAgCGccuggaGCUCGGCGUUGCcGGCg -3'
miRNA:   3'- cCGUGCUgGC------UGGGCCGCGACGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 341 0.74 0.13508
Target:  5'- uGGCGacagUGACCGGCuCCGGCuGCUgGgUGGCg -3'
miRNA:   3'- -CCGU----GCUGGCUG-GGCCG-CGA-CgACCG- -5'
24065 5' -61.8 NC_005262.1 + 45309 0.73 0.146079
Target:  5'- cGGCGuucaGGCCGAgCCCGGCGgacaugccgcCUGCgagGGCa -3'
miRNA:   3'- -CCGUg---CUGGCU-GGGCCGC----------GACGa--CCG- -5'
24065 5' -61.8 NC_005262.1 + 54508 0.73 0.149924
Target:  5'- gGGCcCGACCGACaucaCGGUGaaGCUGGg -3'
miRNA:   3'- -CCGuGCUGGCUGg---GCCGCgaCGACCg -5'
24065 5' -61.8 NC_005262.1 + 63142 0.73 0.149924
Target:  5'- -cCGCGAUgaCGugCCGGCGCaUGCUGGa -3'
miRNA:   3'- ccGUGCUG--GCugGGCCGCG-ACGACCg -5'
24065 5' -61.8 NC_005262.1 + 49896 0.73 0.15789
Target:  5'- cGCGCGGCCGAUcgggCCGGaCGgUGCaggGGCg -3'
miRNA:   3'- cCGUGCUGGCUG----GGCC-GCgACGa--CCG- -5'
24065 5' -61.8 NC_005262.1 + 1053 0.73 0.158298
Target:  5'- aGGCGCGAUCGGCCCGGagccgacaaagaagaGCUGCc--- -3'
miRNA:   3'- -CCGUGCUGGCUGGGCCg--------------CGACGaccg -5'
24065 5' -61.8 NC_005262.1 + 46625 0.73 0.162015
Target:  5'- aGCgGCGGCCGGCgCCGcGCuggGCUGCUGcGCg -3'
miRNA:   3'- cCG-UGCUGGCUG-GGC-CG---CGACGAC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.