miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24065 5' -61.8 NC_005262.1 + 57619 0.73 0.16581
Target:  5'- cGGUACGACCuGaucgcggucgauGCCCGGCGCgacGCUgaacuucGGCg -3'
miRNA:   3'- -CCGUGCUGG-C------------UGGGCCGCGa--CGA-------CCG- -5'
24065 5' -61.8 NC_005262.1 + 43140 0.73 0.166236
Target:  5'- cGGCGCGcgguGCCGGCCgGGUcgauguacucGUaGCUGGCg -3'
miRNA:   3'- -CCGUGC----UGGCUGGgCCG----------CGaCGACCG- -5'
24065 5' -61.8 NC_005262.1 + 46541 0.72 0.170557
Target:  5'- cGGCGCGGCauucgGGUCCGGCGCggGC-GGCg -3'
miRNA:   3'- -CCGUGCUGg----CUGGGCCGCGa-CGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 43838 0.72 0.170557
Target:  5'- gGGC-CGGCCGcGCgCGGCGgUGCgccGGCa -3'
miRNA:   3'- -CCGuGCUGGC-UGgGCCGCgACGa--CCG- -5'
24065 5' -61.8 NC_005262.1 + 57667 0.72 0.174977
Target:  5'- cGGCACGAUCGACUucuCGcGCGCcggGCgcGGCa -3'
miRNA:   3'- -CCGUGCUGGCUGG---GC-CGCGa--CGa-CCG- -5'
24065 5' -61.8 NC_005262.1 + 6051 0.72 0.179499
Target:  5'- cGGCACGAuaCCGcACCaCGGgGUUGCgucaGGCc -3'
miRNA:   3'- -CCGUGCU--GGC-UGG-GCCgCGACGa---CCG- -5'
24065 5' -61.8 NC_005262.1 + 51466 0.72 0.179499
Target:  5'- aGGCGCGGCCuuGgCCGGCGUcGCggacGGCg -3'
miRNA:   3'- -CCGUGCUGGc-UgGGCCGCGaCGa---CCG- -5'
24065 5' -61.8 NC_005262.1 + 49830 0.72 0.184124
Target:  5'- gGGCGCcGCCGGCgUCGGUGCgGCUucGGCc -3'
miRNA:   3'- -CCGUGcUGGCUG-GGCCGCGaCGA--CCG- -5'
24065 5' -61.8 NC_005262.1 + 9226 0.72 0.184124
Target:  5'- cGCAuucCGACCGGCCCGGCGCc---GGUc -3'
miRNA:   3'- cCGU---GCUGGCUGGGCCGCGacgaCCG- -5'
24065 5' -61.8 NC_005262.1 + 11520 0.72 0.187424
Target:  5'- gGGCGCGGCgugucgcgcaccuuCGgcgGCCCGGCGCgGCgcGGCu -3'
miRNA:   3'- -CCGUGCUG--------------GC---UGGGCCGCGaCGa-CCG- -5'
24065 5' -61.8 NC_005262.1 + 34755 0.72 0.188377
Target:  5'- uGCGCG-UCGugCCGGCGCcGCUcgagcucGGCg -3'
miRNA:   3'- cCGUGCuGGCugGGCCGCGaCGA-------CCG- -5'
24065 5' -61.8 NC_005262.1 + 2748 0.72 0.188854
Target:  5'- cGGCcaggACG-CCG-CCCGGCGCcGCgcaGGCa -3'
miRNA:   3'- -CCG----UGCuGGCuGGGCCGCGaCGa--CCG- -5'
24065 5' -61.8 NC_005262.1 + 9140 0.72 0.190776
Target:  5'- cGGCGCcgGGCCGgucggaaugcggaucACCCGGCGCcuucacGCaUGGCg -3'
miRNA:   3'- -CCGUG--CUGGC---------------UGGGCCGCGa-----CG-ACCG- -5'
24065 5' -61.8 NC_005262.1 + 34633 0.72 0.193691
Target:  5'- cGGCAaGAagcUCGACCCGGCGUcGCucgacUGGCu -3'
miRNA:   3'- -CCGUgCU---GGCUGGGCCGCGaCG-----ACCG- -5'
24065 5' -61.8 NC_005262.1 + 17740 0.72 0.195163
Target:  5'- cGGCGCG-CUGgcgggcgaucucuGCCUGcugcucggcgagcucGCGCUGCUGGCg -3'
miRNA:   3'- -CCGUGCuGGC-------------UGGGC---------------CGCGACGACCG- -5'
24065 5' -61.8 NC_005262.1 + 43617 0.72 0.198636
Target:  5'- aGGUgACGcucGCCGGCaCCGGCGCagaaCUGGCa -3'
miRNA:   3'- -CCG-UGC---UGGCUG-GGCCGCGac--GACCG- -5'
24065 5' -61.8 NC_005262.1 + 4765 0.71 0.203691
Target:  5'- -cCGCGGcCCGAUCCGGcCGCgGCaUGGCu -3'
miRNA:   3'- ccGUGCU-GGCUGGGCC-GCGaCG-ACCG- -5'
24065 5' -61.8 NC_005262.1 + 11769 0.71 0.210954
Target:  5'- uGGCGCGGcCCGACCUGgGCGC-GCUccucuacccucacaaGGUg -3'
miRNA:   3'- -CCGUGCU-GGCUGGGC-CGCGaCGA---------------CCG- -5'
24065 5' -61.8 NC_005262.1 + 62722 0.71 0.214135
Target:  5'- cGCACGcACCcugaUCGGCGC-GCUGGCg -3'
miRNA:   3'- cCGUGC-UGGcug-GGCCGCGaCGACCG- -5'
24065 5' -61.8 NC_005262.1 + 35150 0.71 0.214135
Target:  5'- uGCAUaccGCCGAUCCGG-GCgacGCUGGCg -3'
miRNA:   3'- cCGUGc--UGGCUGGGCCgCGa--CGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.