miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24065 5' -61.8 NC_005262.1 + 62722 0.71 0.214135
Target:  5'- cGCACGcACCcugaUCGGCGC-GCUGGCg -3'
miRNA:   3'- cCGUGC-UGGcug-GGCCGCGaCGACCG- -5'
24065 5' -61.8 NC_005262.1 + 13467 0.71 0.216278
Target:  5'- gGGCGCGAa--GCCCGcGCGCgucgcgcgcuacucGCUGGCg -3'
miRNA:   3'- -CCGUGCUggcUGGGC-CGCGa-------------CGACCG- -5'
24065 5' -61.8 NC_005262.1 + 52796 0.71 0.219528
Target:  5'- aGCGCGGCCucgUCCGGCGUcgGCcGGCg -3'
miRNA:   3'- cCGUGCUGGcu-GGGCCGCGa-CGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 52701 0.71 0.219528
Target:  5'- aGGCcgcCGGCCGACgCCGgacgaggccGCGCUGCUGa- -3'
miRNA:   3'- -CCGu--GCUGGCUG-GGC---------CGCGACGACcg -5'
24065 5' -61.8 NC_005262.1 + 11068 0.71 0.225036
Target:  5'- aGCGCGACCGGcguuCCCGGCGC-GCcgaacaGCg -3'
miRNA:   3'- cCGUGCUGGCU----GGGCCGCGaCGac----CG- -5'
24065 5' -61.8 NC_005262.1 + 50360 0.71 0.230661
Target:  5'- gGGCuCGGCCGGCgCgGGCGCgcccucguUGC-GGCg -3'
miRNA:   3'- -CCGuGCUGGCUG-GgCCGCG--------ACGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 53819 0.71 0.230661
Target:  5'- cGGCACGggcaucgaGCUGACgcaCCGGCGCgGCgcggacGGCa -3'
miRNA:   3'- -CCGUGC--------UGGCUG---GGCCGCGaCGa-----CCG- -5'
24065 5' -61.8 NC_005262.1 + 55729 0.71 0.230661
Target:  5'- cGGaCGCGGCCacgagcgcgcGGCCCGGCuucuuGCUGCgcaGGUa -3'
miRNA:   3'- -CC-GUGCUGG----------CUGGGCCG-----CGACGa--CCG- -5'
24065 5' -61.8 NC_005262.1 + 825 0.7 0.236404
Target:  5'- -uCACGACCGuuCCGaCGCauaccUGCUGGCa -3'
miRNA:   3'- ccGUGCUGGCugGGCcGCG-----ACGACCG- -5'
24065 5' -61.8 NC_005262.1 + 22573 0.7 0.242266
Target:  5'- cGGCcuuaGCGGCCGcauGCgCGGCGCUGCUc-- -3'
miRNA:   3'- -CCG----UGCUGGC---UGgGCCGCGACGAccg -5'
24065 5' -61.8 NC_005262.1 + 38064 0.7 0.242266
Target:  5'- cGGCACGGCCG--CUGGCGCgaucuUGCUGa- -3'
miRNA:   3'- -CCGUGCUGGCugGGCCGCG-----ACGACcg -5'
24065 5' -61.8 NC_005262.1 + 60613 0.7 0.248249
Target:  5'- gGGCACGGCgaacGCCauGCGCacGCUGGCg -3'
miRNA:   3'- -CCGUGCUGgc--UGGgcCGCGa-CGACCG- -5'
24065 5' -61.8 NC_005262.1 + 5159 0.7 0.254354
Target:  5'- cGGCGCG-CUGAUcggugacggCCGGCGUcGCgGGCg -3'
miRNA:   3'- -CCGUGCuGGCUG---------GGCCGCGaCGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 24451 0.7 0.260581
Target:  5'- cGuCACGcCCGAUCgaUGGCGCUGCacGGCa -3'
miRNA:   3'- cC-GUGCuGGCUGG--GCCGCGACGa-CCG- -5'
24065 5' -61.8 NC_005262.1 + 46824 0.7 0.266292
Target:  5'- uGGCgGCGAUCGAUCCGGuCGUgccggauUGCgccGGCu -3'
miRNA:   3'- -CCG-UGCUGGCUGGGCC-GCG-------ACGa--CCG- -5'
24065 5' -61.8 NC_005262.1 + 28018 0.69 0.273408
Target:  5'- cGGCGa-GCCGAUCUacgcgGGCGCcgagaGCUGGCg -3'
miRNA:   3'- -CCGUgcUGGCUGGG-----CCGCGa----CGACCG- -5'
24065 5' -61.8 NC_005262.1 + 62989 0.69 0.273408
Target:  5'- uGCGCG-CCaGCUcguCGGCGC-GCUGGCg -3'
miRNA:   3'- cCGUGCuGGcUGG---GCCGCGaCGACCG- -5'
24065 5' -61.8 NC_005262.1 + 11321 0.69 0.276033
Target:  5'- aGCGCGAUCGucgcugucgaGCUCGGCGCgGCucucgaucuugcaggUGGCg -3'
miRNA:   3'- cCGUGCUGGC----------UGGGCCGCGaCG---------------ACCG- -5'
24065 5' -61.8 NC_005262.1 + 49329 0.69 0.280009
Target:  5'- gGGCAUGACCGACgagcaGGCGC-GCgccGCg -3'
miRNA:   3'- -CCGUGCUGGCUGgg---CCGCGaCGac-CG- -5'
24065 5' -61.8 NC_005262.1 + 22328 0.69 0.280009
Target:  5'- uGCGCaGGCCGG-CCGGCGUggGC-GGCg -3'
miRNA:   3'- cCGUG-CUGGCUgGGCCGCGa-CGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.