miRNA display CGI


Results 21 - 40 of 156 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24065 5' -61.8 NC_005262.1 + 24536 0.66 0.447675
Target:  5'- aGCGCcAUCGAUCgGGCGUgacgGCUcaGGCg -3'
miRNA:   3'- cCGUGcUGGCUGGgCCGCGa---CGA--CCG- -5'
24065 5' -61.8 NC_005262.1 + 50081 0.66 0.447675
Target:  5'- cGGCGCGGCUucaucggcggGAgCgGGCGCcGCUgucucgucGGCg -3'
miRNA:   3'- -CCGUGCUGG----------CUgGgCCGCGaCGA--------CCG- -5'
24065 5' -61.8 NC_005262.1 + 25020 0.66 0.442152
Target:  5'- cGCGCGGCCauGugcgcaucccgccauGCCuCGGCGUccuccgGCUGGCc -3'
miRNA:   3'- cCGUGCUGG--C---------------UGG-GCCGCGa-----CGACCG- -5'
24065 5' -61.8 NC_005262.1 + 10865 0.66 0.438491
Target:  5'- aGCAguACCGcgcGCCCGGCGCg---GGCg -3'
miRNA:   3'- cCGUgcUGGC---UGGGCCGCGacgaCCG- -5'
24065 5' -61.8 NC_005262.1 + 43914 0.66 0.438491
Target:  5'- cGCGCGGCCGGCCCGcggccGUGUcGCc-GCg -3'
miRNA:   3'- cCGUGCUGGCUGGGC-----CGCGaCGacCG- -5'
24065 5' -61.8 NC_005262.1 + 60837 0.66 0.438491
Target:  5'- cGGCcuacGCGAUCGGCgUGGCGaugGCcgaGGCa -3'
miRNA:   3'- -CCG----UGCUGGCUGgGCCGCga-CGa--CCG- -5'
24065 5' -61.8 NC_005262.1 + 31054 0.66 0.438491
Target:  5'- uGGUGCuGACCGACgCCGacGCGCUcGCcgaccugaagGGCg -3'
miRNA:   3'- -CCGUG-CUGGCUG-GGC--CGCGA-CGa---------CCG- -5'
24065 5' -61.8 NC_005262.1 + 32968 0.66 0.438491
Target:  5'- uGGC-CGACguuCGACgCGGCGaacGCUcGGCg -3'
miRNA:   3'- -CCGuGCUG---GCUGgGCCGCga-CGA-CCG- -5'
24065 5' -61.8 NC_005262.1 + 23616 0.66 0.438491
Target:  5'- uGCGCGGuCCu-CCCGcGCuuccucCUGCUGGCg -3'
miRNA:   3'- cCGUGCU-GGcuGGGC-CGc-----GACGACCG- -5'
24065 5' -61.8 NC_005262.1 + 11988 0.66 0.429416
Target:  5'- aGCACGACCaGCUaCGGCGUggacacguuUGCacGGCg -3'
miRNA:   3'- cCGUGCUGGcUGG-GCCGCG---------ACGa-CCG- -5'
24065 5' -61.8 NC_005262.1 + 41266 0.66 0.429416
Target:  5'- gGGCGCGcACgCGAUCgCGGCGgUGCccuccUGcGCg -3'
miRNA:   3'- -CCGUGC-UG-GCUGG-GCCGCgACG-----AC-CG- -5'
24065 5' -61.8 NC_005262.1 + 15143 0.66 0.429416
Target:  5'- -uCGCGGCCGGCgucgagUCGGCGCggaUGUUGGa -3'
miRNA:   3'- ccGUGCUGGCUG------GGCCGCG---ACGACCg -5'
24065 5' -61.8 NC_005262.1 + 47439 0.66 0.420452
Target:  5'- aGGUccauGCGGCCuuUCUGGCGCUGCgucucGaGCg -3'
miRNA:   3'- -CCG----UGCUGGcuGGGCCGCGACGa----C-CG- -5'
24065 5' -61.8 NC_005262.1 + 61705 0.66 0.420452
Target:  5'- gGGCGCG-CCGgguucGCUCGGCGC-GCUcuGCu -3'
miRNA:   3'- -CCGUGCuGGC-----UGGGCCGCGaCGAc-CG- -5'
24065 5' -61.8 NC_005262.1 + 35693 0.66 0.420452
Target:  5'- gGGCACGGaagcauCCGcUCCGGCGUcgGCgggacGGCc -3'
miRNA:   3'- -CCGUGCU------GGCuGGGCCGCGa-CGa----CCG- -5'
24065 5' -61.8 NC_005262.1 + 61778 0.66 0.420452
Target:  5'- cGCGcCGACCGACCa-GCGCguuuucgccUGCgcGGCg -3'
miRNA:   3'- cCGU-GCUGGCUGGgcCGCG---------ACGa-CCG- -5'
24065 5' -61.8 NC_005262.1 + 47743 0.66 0.420452
Target:  5'- uGGUGCGccGCCGGCCgCGGCGaacCcGGCa -3'
miRNA:   3'- -CCGUGC--UGGCUGG-GCCGCgacGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 40752 0.66 0.420452
Target:  5'- cGGCGCGuuCCaaaucaaCGGCuaUGCUGGCg -3'
miRNA:   3'- -CCGUGCu-GGcugg---GCCGcgACGACCG- -5'
24065 5' -61.8 NC_005262.1 + 30051 0.66 0.419563
Target:  5'- gGGCAaGACCGACgaugcugCCGGCGaCgacgacGCcGGCa -3'
miRNA:   3'- -CCGUgCUGGCUG-------GGCCGC-Ga-----CGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 62903 0.66 0.419563
Target:  5'- aGCGCG-CCGACgagCUGGCGC-GCaaucucaUGGCa -3'
miRNA:   3'- cCGUGCuGGCUG---GGCCGCGaCG-------ACCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.