miRNA display CGI


Results 41 - 60 of 156 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24065 5' -61.8 NC_005262.1 + 59224 0.66 0.411603
Target:  5'- cGCGCGGCgacgCGGCCCGGCcgGUUcGCcucGGCg -3'
miRNA:   3'- cCGUGCUG----GCUGGGCCG--CGA-CGa--CCG- -5'
24065 5' -61.8 NC_005262.1 + 51268 0.66 0.411603
Target:  5'- cGGCAa-GCUGAaccucaCCGGCcgccgGCUGCUGcGCa -3'
miRNA:   3'- -CCGUgcUGGCUg-----GGCCG-----CGACGAC-CG- -5'
24065 5' -61.8 NC_005262.1 + 25438 0.66 0.411603
Target:  5'- cGCcuACGACaaccuGCCCgaGGCGCUGCgcgaGGCg -3'
miRNA:   3'- cCG--UGCUGgc---UGGG--CCGCGACGa---CCG- -5'
24065 5' -61.8 NC_005262.1 + 5176 0.66 0.410724
Target:  5'- gGGCGCGcaccGCCGAgCCGGUcgcacgcgccgccGCcGCgGGCc -3'
miRNA:   3'- -CCGUGC----UGGCUgGGCCG-------------CGaCGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 46640 0.67 0.402869
Target:  5'- gGGCACGcugaugGCCGACagCGGCaGCaugGCgccGGCa -3'
miRNA:   3'- -CCGUGC------UGGCUGg-GCCG-CGa--CGa--CCG- -5'
24065 5' -61.8 NC_005262.1 + 58915 0.67 0.402869
Target:  5'- aGGCcgGCGGcCCGACCgaUGGCGCgcGCUucucggucGGCg -3'
miRNA:   3'- -CCG--UGCU-GGCUGG--GCCGCGa-CGA--------CCG- -5'
24065 5' -61.8 NC_005262.1 + 2593 0.67 0.402869
Target:  5'- --gACGACCGcucuAUCgGGuUGCUGCUGGUc -3'
miRNA:   3'- ccgUGCUGGC----UGGgCC-GCGACGACCG- -5'
24065 5' -61.8 NC_005262.1 + 11634 0.67 0.402869
Target:  5'- uGCACcAUCGGCUCGGCGgC-GCcGGCg -3'
miRNA:   3'- cCGUGcUGGCUGGGCCGC-GaCGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 13555 0.67 0.402869
Target:  5'- aGGcCGCGACCGuuGCuuGGCauccGCUcgGCUGGa -3'
miRNA:   3'- -CC-GUGCUGGC--UGggCCG----CGA--CGACCg -5'
24065 5' -61.8 NC_005262.1 + 60202 0.67 0.394255
Target:  5'- cGGCAaggagcCGGCCGGCgaggUCGGCaaGCUGCUGa- -3'
miRNA:   3'- -CCGU------GCUGGCUG----GGCCG--CGACGACcg -5'
24065 5' -61.8 NC_005262.1 + 56945 0.67 0.394255
Target:  5'- cGCACG-CCGAUCC-GCGCggGCgaguucgcgGGCg -3'
miRNA:   3'- cCGUGCuGGCUGGGcCGCGa-CGa--------CCG- -5'
24065 5' -61.8 NC_005262.1 + 14239 0.67 0.394255
Target:  5'- cGGCGCGGCgGAcaauCCCGGCGCacGCc--- -3'
miRNA:   3'- -CCGUGCUGgCU----GGGCCGCGa-CGaccg -5'
24065 5' -61.8 NC_005262.1 + 49055 0.67 0.394255
Target:  5'- aGCGCcGCCuGCaucugCGGCGUcaUGCUGGCg -3'
miRNA:   3'- cCGUGcUGGcUGg----GCCGCG--ACGACCG- -5'
24065 5' -61.8 NC_005262.1 + 44611 0.67 0.394255
Target:  5'- aGGUagACGAUCaGCgCGGCGaucagGCUGGCc -3'
miRNA:   3'- -CCG--UGCUGGcUGgGCCGCga---CGACCG- -5'
24065 5' -61.8 NC_005262.1 + 43080 0.67 0.386604
Target:  5'- uGGCcCGACacgaagCGGCCCGGCGCgguuuucagccagucGUUGcGCg -3'
miRNA:   3'- -CCGuGCUG------GCUGGGCCGCGa--------------CGAC-CG- -5'
24065 5' -61.8 NC_005262.1 + 14640 0.67 0.38576
Target:  5'- cGGCgagACGccuGCCGAUCCaGCGCaUGCacGGCa -3'
miRNA:   3'- -CCG---UGC---UGGCUGGGcCGCG-ACGa-CCG- -5'
24065 5' -61.8 NC_005262.1 + 27164 0.67 0.38576
Target:  5'- cGGCAC-ACCGGCCgcauggugUGGUGCcgUGCUGuGUg -3'
miRNA:   3'- -CCGUGcUGGCUGG--------GCCGCG--ACGAC-CG- -5'
24065 5' -61.8 NC_005262.1 + 9501 0.67 0.380721
Target:  5'- uGGUGCGAUuugCGGCCCGaccgcuuuucaauauGCGCgGCgGGCu -3'
miRNA:   3'- -CCGUGCUG---GCUGGGC---------------CGCGaCGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 25247 0.67 0.377387
Target:  5'- cGCGCGcaacGCCGGCuCCuGCGCcGCcucUGGCa -3'
miRNA:   3'- cCGUGC----UGGCUG-GGcCGCGaCG---ACCG- -5'
24065 5' -61.8 NC_005262.1 + 12319 0.67 0.377387
Target:  5'- cGGCauGCGGCuCGugCCGcaGCGCgcgGC-GGCa -3'
miRNA:   3'- -CCG--UGCUG-GCugGGC--CGCGa--CGaCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.