miRNA display CGI


Results 61 - 80 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24065 5' -61.8 NC_005262.1 + 25247 0.67 0.377387
Target:  5'- cGCGCGcaacGCCGGCuCCuGCGCcGCcucUGGCa -3'
miRNA:   3'- cCGUGC----UGGCUG-GGcCGCGaCG---ACCG- -5'
24065 5' -61.8 NC_005262.1 + 59069 0.67 0.369137
Target:  5'- cGGCGCGGgaGGCgugaggccgCCGGCGgCcgGCUGGUu -3'
miRNA:   3'- -CCGUGCUggCUG---------GGCCGC-Ga-CGACCG- -5'
24065 5' -61.8 NC_005262.1 + 60147 0.67 0.369137
Target:  5'- aGGCAUGGgCGAaguaCCCGGCcGCcGUgaaGGCg -3'
miRNA:   3'- -CCGUGCUgGCU----GGGCCG-CGaCGa--CCG- -5'
24065 5' -61.8 NC_005262.1 + 63155 0.67 0.369137
Target:  5'- cGGCAa-ACCGAaCaaGCGCUGCUGGg -3'
miRNA:   3'- -CCGUgcUGGCUgGgcCGCGACGACCg -5'
24065 5' -61.8 NC_005262.1 + 29932 0.67 0.369137
Target:  5'- cGGCGauagcUGAaggaCGACCCGGaCGCggGCggcGGCg -3'
miRNA:   3'- -CCGU-----GCUg---GCUGGGCC-GCGa-CGa--CCG- -5'
24065 5' -61.8 NC_005262.1 + 44396 0.67 0.369137
Target:  5'- aGGCGCGAgggauaCC-ACCCGcGCGCcGCacacgaUGGCg -3'
miRNA:   3'- -CCGUGCU------GGcUGGGC-CGCGaCG------ACCG- -5'
24065 5' -61.8 NC_005262.1 + 63270 0.67 0.360206
Target:  5'- uGGCA--GCCGccGCCugcuugaCGGCcgGCUGCUGGCu -3'
miRNA:   3'- -CCGUgcUGGC--UGG-------GCCG--CGACGACCG- -5'
24065 5' -61.8 NC_005262.1 + 58505 0.67 0.360206
Target:  5'- cGGCGaaccugaaccaguCGACCGcccuGCCCGuGCuGCUGCacgaGGCg -3'
miRNA:   3'- -CCGU-------------GCUGGC----UGGGC-CG-CGACGa---CCG- -5'
24065 5' -61.8 NC_005262.1 + 46736 0.67 0.358598
Target:  5'- cGGCACGACCGgaucgaucgccgccACgCCGGuCGUacagGC-GGCg -3'
miRNA:   3'- -CCGUGCUGGC--------------UG-GGCC-GCGa---CGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 33945 0.67 0.357796
Target:  5'- gGGCACGcggcaAgCGAuCCCGGaacgcggcgucgaGCUGCUGGa -3'
miRNA:   3'- -CCGUGC-----UgGCU-GGGCCg------------CGACGACCg -5'
24065 5' -61.8 NC_005262.1 + 58826 0.68 0.353011
Target:  5'- aGGCAUGGCUGcUgCGGCGCUuC-GGCa -3'
miRNA:   3'- -CCGUGCUGGCuGgGCCGCGAcGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 49189 0.68 0.353011
Target:  5'- cGCACGGCgaUGAucUCCGGCa-UGCUGGCc -3'
miRNA:   3'- cCGUGCUG--GCU--GGGCCGcgACGACCG- -5'
24065 5' -61.8 NC_005262.1 + 24839 0.68 0.345138
Target:  5'- cGGCGCcguGCCGAucaCCCuGCGCcagUGCUcGGCg -3'
miRNA:   3'- -CCGUGc--UGGCU---GGGcCGCG---ACGA-CCG- -5'
24065 5' -61.8 NC_005262.1 + 16496 0.68 0.345138
Target:  5'- aGCugGGCgaGGCgCUgGGCGCUGCgcuggGGCu -3'
miRNA:   3'- cCGugCUGg-CUG-GG-CCGCGACGa----CCG- -5'
24065 5' -61.8 NC_005262.1 + 41774 0.68 0.345138
Target:  5'- cGGCAUagauGCCGAUgCCGGUGCcgGC-GGCg -3'
miRNA:   3'- -CCGUGc---UGGCUG-GGCCGCGa-CGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 53595 0.68 0.345138
Target:  5'- -uCugGGCCGGCCCcugcGGCGuCUGCacuucGGCc -3'
miRNA:   3'- ccGugCUGGCUGGG----CCGC-GACGa----CCG- -5'
24065 5' -61.8 NC_005262.1 + 40661 0.68 0.337391
Target:  5'- aGCGCGACggucgCGGCaccgCCGGUGUUGCccGGCg -3'
miRNA:   3'- cCGUGCUG-----GCUG----GGCCGCGACGa-CCG- -5'
24065 5' -61.8 NC_005262.1 + 48775 0.68 0.337391
Target:  5'- cGGCGCGGcguCCGGCUgGaacGCGCUGgCcGGCa -3'
miRNA:   3'- -CCGUGCU---GGCUGGgC---CGCGAC-GaCCG- -5'
24065 5' -61.8 NC_005262.1 + 162 0.68 0.335857
Target:  5'- cGGCGCGGCCGACUucuucgcgagccgCGGCcuccccgGCacauUGCaGGCa -3'
miRNA:   3'- -CCGUGCUGGCUGG-------------GCCG-------CG----ACGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 16568 0.68 0.329771
Target:  5'- cGGcCGCGgauGCCGAgCaGGCGCgugUGCUGGUc -3'
miRNA:   3'- -CC-GUGC---UGGCUgGgCCGCG---ACGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.