miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24065 5' -61.8 NC_005262.1 + 162 0.68 0.335857
Target:  5'- cGGCGCGGCCGACUucuucgcgagccgCGGCcuccccgGCacauUGCaGGCa -3'
miRNA:   3'- -CCGUGCUGGCUGG-------------GCCG-------CG----ACGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 341 0.74 0.13508
Target:  5'- uGGCGacagUGACCGGCuCCGGCuGCUgGgUGGCg -3'
miRNA:   3'- -CCGU----GCUGGCUG-GGCCG-CGA-CgACCG- -5'
24065 5' -61.8 NC_005262.1 + 825 0.7 0.236404
Target:  5'- -uCACGACCGuuCCGaCGCauaccUGCUGGCa -3'
miRNA:   3'- ccGUGCUGGCugGGCcGCG-----ACGACCG- -5'
24065 5' -61.8 NC_005262.1 + 1053 0.73 0.158298
Target:  5'- aGGCGCGAUCGGCCCGGagccgacaaagaagaGCUGCc--- -3'
miRNA:   3'- -CCGUGCUGGCUGGGCCg--------------CGACGaccg -5'
24065 5' -61.8 NC_005262.1 + 2593 0.67 0.402869
Target:  5'- --gACGACCGcucuAUCgGGuUGCUGCUGGUc -3'
miRNA:   3'- ccgUGCUGGC----UGGgCC-GCGACGACCG- -5'
24065 5' -61.8 NC_005262.1 + 2748 0.72 0.188854
Target:  5'- cGGCcaggACG-CCG-CCCGGCGCcGCgcaGGCa -3'
miRNA:   3'- -CCG----UGCuGGCuGGGCCGCGaCGa--CCG- -5'
24065 5' -61.8 NC_005262.1 + 4559 0.68 0.322279
Target:  5'- cGCGCGGCgcaucuCGcGCCagcggCGGCGCUGCUcgGGCg -3'
miRNA:   3'- cCGUGCUG------GC-UGG-----GCCGCGACGA--CCG- -5'
24065 5' -61.8 NC_005262.1 + 4765 0.71 0.203691
Target:  5'- -cCGCGGcCCGAUCCGGcCGCgGCaUGGCu -3'
miRNA:   3'- ccGUGCU-GGCUGGGCC-GCGaCG-ACCG- -5'
24065 5' -61.8 NC_005262.1 + 5081 0.76 0.090719
Target:  5'- cGGCgcguGCGACCGGCUCGGCGgUGCgcgcccGGUu -3'
miRNA:   3'- -CCG----UGCUGGCUGGGCCGCgACGa-----CCG- -5'
24065 5' -61.8 NC_005262.1 + 5119 0.69 0.307679
Target:  5'- aGGCGcCGGCCGGCgagcaaCUGcCGCUGgaGGCa -3'
miRNA:   3'- -CCGU-GCUGGCUG------GGCcGCGACgaCCG- -5'
24065 5' -61.8 NC_005262.1 + 5159 0.7 0.254354
Target:  5'- cGGCGCG-CUGAUcggugacggCCGGCGUcGCgGGCg -3'
miRNA:   3'- -CCGUGCuGGCUG---------GGCCGCGaCGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 5176 0.66 0.410724
Target:  5'- gGGCGCGcaccGCCGAgCCGGUcgcacgcgccgccGCcGCgGGCc -3'
miRNA:   3'- -CCGUGC----UGGCUgGGCCG-------------CGaCGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 5196 0.68 0.314186
Target:  5'- gGGCGCGGCCGGCgCgaccgagGGCGUauccUGCacgaucgccgUGGCg -3'
miRNA:   3'- -CCGUGCUGGCUGgG-------CCGCG----ACG----------ACCG- -5'
24065 5' -61.8 NC_005262.1 + 6051 0.72 0.179499
Target:  5'- cGGCACGAuaCCGcACCaCGGgGUUGCgucaGGCc -3'
miRNA:   3'- -CCGUGCU--GGC-UGG-GCCgCGACGa---CCG- -5'
24065 5' -61.8 NC_005262.1 + 9140 0.72 0.190776
Target:  5'- cGGCGCcgGGCCGgucggaaugcggaucACCCGGCGCcuucacGCaUGGCg -3'
miRNA:   3'- -CCGUG--CUGGC---------------UGGGCCGCGa-----CG-ACCG- -5'
24065 5' -61.8 NC_005262.1 + 9226 0.72 0.184124
Target:  5'- cGCAuucCGACCGGCCCGGCGCc---GGUc -3'
miRNA:   3'- cCGU---GCUGGCUGGGCCGCGacgaCCG- -5'
24065 5' -61.8 NC_005262.1 + 9501 0.67 0.380721
Target:  5'- uGGUGCGAUuugCGGCCCGaccgcuuuucaauauGCGCgGCgGGCu -3'
miRNA:   3'- -CCGUGCUG---GCUGGGC---------------CGCGaCGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 10615 0.76 0.093186
Target:  5'- cGGCAuagccguuuCGGCCGccCCCGcGCuGCUGCUGGCc -3'
miRNA:   3'- -CCGU---------GCUGGCu-GGGC-CG-CGACGACCG- -5'
24065 5' -61.8 NC_005262.1 + 10865 0.66 0.438491
Target:  5'- aGCAguACCGcgcGCCCGGCGCg---GGCg -3'
miRNA:   3'- cCGUgcUGGC---UGGGCCGCGacgaCCG- -5'
24065 5' -61.8 NC_005262.1 + 11068 0.71 0.225036
Target:  5'- aGCGCGACCGGcguuCCCGGCGC-GCcgaacaGCg -3'
miRNA:   3'- cCGUGCUGGCU----GGGCCGCGaCGac----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.