miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24065 5' -61.8 NC_005262.1 + 11074 0.66 0.456965
Target:  5'- aGCcCGAgCGGCCaaagGGCgGCccGCUGGCa -3'
miRNA:   3'- cCGuGCUgGCUGGg---CCG-CGa-CGACCG- -5'
24065 5' -61.8 NC_005262.1 + 11321 0.69 0.276033
Target:  5'- aGCGCGAUCGucgcugucgaGCUCGGCGCgGCucucgaucuugcaggUGGCg -3'
miRNA:   3'- cCGUGCUGGC----------UGGGCCGCGaCG---------------ACCG- -5'
24065 5' -61.8 NC_005262.1 + 11520 0.72 0.187424
Target:  5'- gGGCGCGGCgugucgcgcaccuuCGgcgGCCCGGCGCgGCgcGGCu -3'
miRNA:   3'- -CCGUGCUG--------------GC---UGGGCCGCGaCGa-CCG- -5'
24065 5' -61.8 NC_005262.1 + 11634 0.67 0.402869
Target:  5'- uGCACcAUCGGCUCGGCGgC-GCcGGCg -3'
miRNA:   3'- cCGUGcUGGCUGGGCCGC-GaCGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 11720 0.66 0.447675
Target:  5'- cGGCGCcGCCGAgCCgauGGUGCaGggGGCa -3'
miRNA:   3'- -CCGUGcUGGCUgGG---CCGCGaCgaCCG- -5'
24065 5' -61.8 NC_005262.1 + 11769 0.71 0.210954
Target:  5'- uGGCGCGGcCCGACCUGgGCGC-GCUccucuacccucacaaGGUg -3'
miRNA:   3'- -CCGUGCU-GGCUGGGC-CGCGaCGA---------------CCG- -5'
24065 5' -61.8 NC_005262.1 + 11988 0.66 0.429416
Target:  5'- aGCACGACCaGCUaCGGCGUggacacguuUGCacGGCg -3'
miRNA:   3'- cCGUGCUGGcUGG-GCCGCG---------ACGa-CCG- -5'
24065 5' -61.8 NC_005262.1 + 12319 0.67 0.377387
Target:  5'- cGGCauGCGGCuCGugCCGcaGCGCgcgGC-GGCa -3'
miRNA:   3'- -CCG--UGCUG-GCugGGC--CGCGa--CGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 12890 0.66 0.466357
Target:  5'- cGCuCGugCGcaucagcCCCGGC-CUGCUGGa -3'
miRNA:   3'- cCGuGCugGCu------GGGCCGcGACGACCg -5'
24065 5' -61.8 NC_005262.1 + 13132 0.66 0.447675
Target:  5'- uGGCACaauuagguCCG-CCgCGcGCGCUGCgcGGCa -3'
miRNA:   3'- -CCGUGcu------GGCuGG-GC-CGCGACGa-CCG- -5'
24065 5' -61.8 NC_005262.1 + 13465 0.66 0.466357
Target:  5'- uGCGCG-C--GCCCaGGCGCaggauuccgUGCUGGCg -3'
miRNA:   3'- cCGUGCuGgcUGGG-CCGCG---------ACGACCG- -5'
24065 5' -61.8 NC_005262.1 + 13467 0.71 0.216278
Target:  5'- gGGCGCGAa--GCCCGcGCGCgucgcgcgcuacucGCUGGCg -3'
miRNA:   3'- -CCGUGCUggcUGGGC-CGCGa-------------CGACCG- -5'
24065 5' -61.8 NC_005262.1 + 13555 0.67 0.402869
Target:  5'- aGGcCGCGACCGuuGCuuGGCauccGCUcgGCUGGa -3'
miRNA:   3'- -CC-GUGCUGGC--UGggCCG----CGA--CGACCg -5'
24065 5' -61.8 NC_005262.1 + 14239 0.67 0.394255
Target:  5'- cGGCGCGGCgGAcaauCCCGGCGCacGCc--- -3'
miRNA:   3'- -CCGUGCUGgCU----GGGCCGCGa-CGaccg -5'
24065 5' -61.8 NC_005262.1 + 14640 0.67 0.38576
Target:  5'- cGGCgagACGccuGCCGAUCCaGCGCaUGCacGGCa -3'
miRNA:   3'- -CCG---UGC---UGGCUGGGcCGCG-ACGa-CCG- -5'
24065 5' -61.8 NC_005262.1 + 15143 0.66 0.429416
Target:  5'- -uCGCGGCCGGCgucgagUCGGCGCggaUGUUGGa -3'
miRNA:   3'- ccGUGCUGGCUG------GGCCGCG---ACGACCg -5'
24065 5' -61.8 NC_005262.1 + 16496 0.68 0.345138
Target:  5'- aGCugGGCgaGGCgCUgGGCGCUGCgcuggGGCu -3'
miRNA:   3'- cCGugCUGg-CUG-GG-CCGCGACGa----CCG- -5'
24065 5' -61.8 NC_005262.1 + 16568 0.68 0.329771
Target:  5'- cGGcCGCGgauGCCGAgCaGGCGCgugUGCUGGUc -3'
miRNA:   3'- -CC-GUGC---UGGCUgGgCCGCG---ACGACCG- -5'
24065 5' -61.8 NC_005262.1 + 16975 0.76 0.095717
Target:  5'- cGGUGCggugugGugCGGCCCGGCGCgcgGCcgGGCg -3'
miRNA:   3'- -CCGUG------CugGCUGGGCCGCGa--CGa-CCG- -5'
24065 5' -61.8 NC_005262.1 + 17740 0.72 0.195163
Target:  5'- cGGCGCG-CUGgcgggcgaucucuGCCUGcugcucggcgagcucGCGCUGCUGGCg -3'
miRNA:   3'- -CCGUGCuGGC-------------UGGGC---------------CGCGACGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.